Compare the differences of synonymous codon usage between the two species within cardiovirus

Liu, Wen-qian; Zhang, Jie; Zhang, Yi-qiang; Zhou, Jian-hua; Chen, Hao-tai; Ma, Li-na; Ding, Yao-zhong; Liu, Yongsheng

doi:10.1186/1743-422X-8-325

Virology Journal

Table 2 Identified nucleotide contents in complete coding region (length > 250 bps) in the Cardiovirus genome

From: Compare the differences of synonymous codon usage between the two species within cardiovirus

NO.	T(U)	C	A	G	T-3	C-3	A-3	G-3	(C+G)₃%	(C+G)₁₂%	ENC
EMCV
1	25.37	24.67	26.30	23.67	28.13	25.38	22.02	24.47	49.85	47.58	54.70
2	25.37	24.67	26.30	23.67	28.09	25.43	21.94	24.55	49.98	47.51	54.75
3	25.44	24.64	26.22	23.70	28.17	25.38	21.98	24.47	49.85	47.58	54.67
4	25.35	24.71	26.28	23.65	28.04	25.47	21.98	24.51	49.98	47.56	54.73
5	25.37	24.71	26.31	23.61	19.89	20.72	27.56	31.84	52.55	46.21	56.11
6	25.29	24.77	26.22	23.71	28.00	25.56	21.89	24.55	50.11	47.67	54.88
7	25.43	24.64	26.24	23.70	28.22	25.34	21.89	24.55	49.89	47.56	54.88
8	25.37	24.70	26.28	23.65	28.13	25.38	21.98	24.51	49.89	47.58	54.80
9	25.35	24.80	26.29	23.56	28.04	28.09	29.31	14.57	42.65	51.21	54.88
10	25.32	24.76	26.25	23.67	28.09	25.43	21.98	24.51	49.93	47.67	54.84
11	26.52	23.76	26.32	23.41	31.39	22.76	22.10	23.76	46.51	47.49	55.10
12	25.40	24.68	26.28	23.64	28.17	25.38	21.98	24.47	49.85	47.56	54.58
13	25.89	23.84	26.78	23.49	29.22	23.51	23.20	24.07	47.58	47.21	54.59
14	25.34	24.61	26.49	23.56	28.09	25.56	22.07	24.29	49.85	47.34	55.06
15	25.92	23.81	26.75	23.52	29.22	23.46	23.24	24.07	47.54	47.23	54.40
16	25.86	23.83	26.76	23.55	29.18	23.55	23.16	24.12	47.67	47.23	54.64
17	25.38	24.68	26.25	23.68	28.09	25.38	21.94	24.60	49.98	47.56	54.93
18	26.55	23.74	26.30	23.41	31.43	22.76	22.10	23.71	46.47	47.49	55.01
ThV
1	26.95	27.33	24.31	21.41	32.51	32.99	16.93	17.58	50.56	47.83	52.40
2	26.92	27.33	24.31	21.44	32.47	32.94	16.93	17.66	50.61	47.85	52.50
3	27.37	27.09	24.17	21.37	32.97	33.10	16.77	17.16	50.26	47.57	52.48
4	26.84	27.52	24.45	21.20	32.42	33.42	17.23	16.93	50.35	47.89	52.29
5	27.03	27.56	24.23	21.18	32.51	33.90	16.75	16.84	50.74	47.74	51.90
6	26.90	27.52	24.34	21.24	31.99	33.85	17.01	17.14	51.00	47.64	52.48
7	27.21	26.97	24.13	21.69	33.81	31.29	16.58	18.32	49.61	48.18	52.58
8	25.55	25.69	27.44	21.32	28.64	29.42	23.66	18.28	47.70	46.66	54.61
9	25.64	25.58	27.37	21.42	28.90	28.90	23.57	18.63	47.53	46.73	54.68
10	25.61	25.53	27.54	21.32	29.07	28.55	24.22	18.15	46.71	46.92	54.94
11	28.33	22.36	29.53	19.78	34.00	21.68	28.65	15.67	37.35	44.54	48.62
12	27.87	22.77	29.38	19.98	33.44	22.67	27.11	16.78	39.45	44.40	50.34
13	27.71	23.05	29.95	19.28	32.62	23.69	28.05	15.64	39.33	43.84	49.83
14	28.05	22.63	29.89	19.43	33.89	22.43	27.79	15.90	38.33	43.92	49.48
15	27.93	22.79	29.89	19.38	33.45	22.91	27.96	15.68	38.59	43.97	49.26
16	27.95	22.65	29.67	19.73	33.28	22.43	27.70	16.59	39.02	44.05	50.13
17	27.73	23.11	30.08	19.08	32.75	23.69	28.40	15.16	38.85	43.86	49.67
18	28.09	22.52	29.98	19.41	33.75	22.34	28.27	15.64	37.98	43.90	48.47
19	28.15	22.40	30.02	19.43	33.89	22.13	28.18	15.81	37.94	43.77	48.47
20	28.19	22.42	30.04	19.35	33.80	22.30	28.31	15.59	37.89	43.71	48.24
21	27.82	22.94	30.11	19.13	33.10	23.21	28.48	15.20	38.42	43.90	49.35

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ISSN: 1743-422X

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