Identification of new, emerging HIV-1 unique recombinant forms and drug resistant viruses circulating in Cameroon

Table 4 Phylogenetic association of patient isolates.

Sample ID	Sex	Mode of Transmission	Place	Bootstrap	Gag-p17	Pol	Env-gp41	Genotype
Gag Sequences (p17)
06CMBDHS019	F	Hx.Sex	Buea	100%	F2	F2	F2	F2
06CMBDHS024	F	Hx.Sex	Buea		F2	CRF02	F2	URF*
06CMLPH11TT	F	Hx. Sex	Limbe	100%	CRF11	CRF01_AE	CRF02	URF
06CMLPH19CM	F	Hx. Sex	Limbe		CRF11	CRF01_AE	CRF02	URF
Pol Sequences
06CMLPH19CM	F	Hx. Sex	Limbe	99%	CRF11	CRF01_AE	CRF02	URF
06CMLPH11TT	F	Hx. Sex	Limbe		CRF11	CRF01_AE	CRF02	URF
06CMLPH17HT	M	Hx. Sex	Limbe	99%	CRF02	CRF02	CRF02	CRF02
06CMBDHS024	F	Hx.Sex	Buea		F2	CRF02	F2	URF*
Env Sequences (gp41)
06CMLPH02MG	F	Hx. Sex	Limbe	97-99%	CRF02	CRF02	CRF02	CRF02
06CMLPH17HT	M	Hx. Sex	Limbe		CRF02	CRF02	CRF02	CRF02
06CMBDHS019	F	Hx. Sex	Buea	99%	F2	F2	F2	F2
06CMBDHS024	F	Hx.Sex	Buea		F2	CRF02	F2	URF*

Phylogenetically associated sequences are in rows for p17, pol and Env gp41 with Bootstrap values indicated. Columns indicate demographics and genotype. Patient IDs marked (*) demonstrate the emergence of URF’s within the population or that potentially had a common source of infection.
Hx: Heterosexual, *pol gene has CRF02_AG

ISSN: 1743-422X