Table 2 Comparison of the gene segments of A/chicken/NS-339/08 to those of H5N1 viruses from Thailand.
From: Genetic characterization of 2008 reassortant influenza A virus (H5N1), Thailand
Virus | Nucleotide identity (%) | |||||||
|---|---|---|---|---|---|---|---|---|
| Â | Genea | |||||||
| Â | PB2 | PB1 | PA | HA | NP | NA | M | NS |
| Â | (73-2220) | (49-2238) | (28-2142) | (16-1667) | (1-1458) | (25-1299) | (1-951) | (10-822) |
A/Goose/Guangdong/1/96 | 92.7 | 92.5 | 92.5 | 95.9 | 92.9 | 90.1 | 95.7 | 69.2 |
A/Chicken/Thailand/CU-K2/04 | 98.0 | 98.3 | 98.5 | 99.0 | 99.4 | 98.1 | 98.8 | 98.5 |
A/Chicken/Thailand/CU-23/04 | 97.8 | 98.2 | 98.5 | 99.0 | 99.3 | 98.0 | 98.7 | 98.9 |
A/Chicken/Thailand/NIAH7540/04 | 97.4 | 98.5 | 98.4 | 98.7 | 99.1 | 98.6 | 98.7 | 99.0 |
A/duck/Thailand/NIAH8246/04 | 98.3 | 98.6 | 98.3 | 98.6 | 98.9 | 98.5 | 98.6 | 98.8 |
A/Chicken/Thailand/CK-160/05 | 98.4 | 98.7 | 98.2 | 98.3 | 99.0 | 98.6 | 98.7 | 99.4 |
A/Chicken/Thailand/PC-168/06 | 97.4 | 97.7 | 98.9 | 99.0 | 99.7 | 98.0 d | 99.1 | 98.3 |
A/Chicken/Thailand/PC-170/06 | 98.9 | 99.0 | 97.9 | 97.8 | 98.8 | 99.1 | 98.6 | 99.8 |
A/Duck/Thailand/CU-329/07 | 98.1 | 98.3 | 97.9 | 97.9 | 98.8 | 98.0 | 98.2 | 98.6 |
A/Chicken/Thailand/ICRC-195/07 | 99.2 b | 99.1 | 99.2 | 99.4 | 99.4 c | 99.5 | 99.4 | 99.8 |
A/Chicken/Thailand/ICRC-213/07 | 98.0 | 99.1 | 98.6 | 98.9 | 99.3 | 99.5 | 98.8 | 98.8 |
A/Chicken/Thailand/NS-339/08* | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 |
A/Chicken/Thailand/PC-340/08* | 99.9 | 100 | 99.9 | 99.6 | 99.7 | 100 | 99.9 | 100 |
A/Chicken/Thailand/NS-341/08* | 99.9 | 99.9 | 99.8 | 99.5 | 99.9 | 99.8 | 99.6 e | 100 |
A/Chicken/Thailand/NS-342/08* | 99.9 | 99.9 | 99.7 | 99.5 | 99.9 | 99.9 | 99.9 | 100 |
A/Chicken/Thailand/ST- 351/08* | 98.2 | 98.4 | 98.6 | 98.8 | 99.5 | 98.0 | 98.9 | 99.0 |
A/Chicken/Thailand/CU-354/08* | N/A | 98.0 | N/A | 98.6 | 99.2 | 99.8 | 98.5 | 98.5 |
A/Chicken/Thailand/NIAH115067/08 | 99.5 | 99.7 | 99.4 | 99.6 | 99.7 | 99.8 | 99.7 | 99.4 |
A/Chicken/Thailand/NIAH114843/08 | 98.9 | 99.2 | 99.1 | 99.2 | 99.5 | 98.9 | 99.4 | 99.6 |