Table 1 Description of CHIKV Isolates from diverse geographical origin used in this study
From: Appearance of EI: A226V mutant Chikungunya virus in Coastal Karnataka, India during 2008 outbreak
Sl. No | Virus ID | Year of Collection | Place | Genotype | GenBank Acc. No |
|---|---|---|---|---|---|
1 | DRDE 06 | 2006 | AP, India | ECSA | EF210157 |
2 | DRDE 07 | 2007 | Kerala, India | ECSA | EU372006 |
3 | US IND 06 | 2006 | US | ECSA | EF187887 |
4 | RU 06 21 | 2006 | Reunion | ECSA | AM258992 |
5 | RU 06 27 | 2006 | Reunion | ECSA | AM258993 |
6 | RU 06 49 | 2006 | Reunion | ECSA | AM258994 |
7 | RU 05 115 | 2005 | Reunion | ECSA | AM258990 |
8 | RU 05 209 | 2005 | Reunion | ECSA | AM258991 |
9 | Maurititus 06 | 2006 | Maurititus | ECSA | EF187893 |
10 | RU 06 OPY1 | 2006 | Reunion | ECSA | DQ443544 |
12 | MH 2000Yawat | 2000 | Yawat, MH, India | ECSA | EF027139 |
13 | ROSS | 1953 | Tanzania | ECSA | AF490259 |
14 | S 27 | 1953 | Tanzania | ECSA | NC_004162 |
15 | MH 73 | 1973 | MH, India | Asian | EF027141 |
16 | WB 63 | 1963 | WB, India | Asian | EF027140 |
17 | Senegal 66 | 1966 | Senegal | West Africa | AF192891 |
18 | Nigeria 64 | 1964 | Nigeria | West Africa | AF192893 |
19 | Senegal 83 | 1983 | Senegal | West Africa | AY726732 |
20 | Italy 07 | 2007 | Italy | ECSA | EU244823 |
21 | DRDE 08 53 | 2008 | Karnataka, India | ECSA | GQ996377 |
22 | DRDE 08 47 | 2008 | Karnataka, India | ECSA | GQ996376 |
23 | DRDE 08 46 | 2008 | Karnataka, India | ECSA | GQ996375 |
24 | DRDE 08 43 | 2008 | Karnataka, India | ECSA | GQ996374 |
25 | DRDE 08 40 | 2008 | Karnataka, India | ECSA | GQ996373 |
26 | DRDE 08 39 | 2008 | Karnataka, India | ECSA | GQ996372 |
27 | DRDE 08 30 | 2008 | Karnataka, India | ECSA | GQ996371 |
28 | DRDE 08 29 | 2008 | Karnataka, India | ECSA | GQ996370 |
29 | CIIMS 06-S18 | 2006 | Nagpur, India | ECSA | GQ996379 |
30 | CIIMS 06-C32 | 2006 | Nagpur, India | ECSA | GQ996378 |
31 | TS1GSDUSARMID | 2007* | USA | Asian | EF452494 |
32 | ThailandUSARMID | - | Thailand | Asian | EF452493 |
33 | Alapuzha-07(03) | 2007 | Kerala | ECSA | EU287996 |
34 | Alapuzha-07(03) | 2007 | Kerala | ECSA | EU170524 |
35 | Pathanamthitta-07(03) | 2007 | Kerala | ECSA | EU288001 |