| Transition/transversion ratio | Kappa | Model | Shape parameter (α) | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Phylogeny | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
Figure 2 M segment | - | - | GTR + Γ | 0.1401 | ||||||
Figure 3 S segment | - | - | GTR + Γ | 0.1675 | ||||||
Figure 8 M segment | 7.7887 | 15.58 | K80(K2P) + Γ | 0.0004 | ||||||
Figure 8 S segment | - | - | GTR + Γ | 0.1693 | ||||||
 | Substitution rate matrix | Proportion of each nucleotide | ||||||||
Phylogeny | AC | AG | AT | CG | CT | GT | A | C | G | T |
Figure 2 M segment | 1.000 | 9.889 | 0.176 | 0.176 | 9.889 | 1.000 | 0.339 | 0.181 | 0.167 | 0.314 |
Figure 3 S segment | 2.349 | 18.668 | 1.041 | 0.258 | 26.663 | 1.000 | 0.302 | 0.196 | 0.224 | 0.278 |
Figure 8 M segment | - | - | - | - | - | - | 0.250 | 0.250 | 0.250 | 0.250 |
Figure 8 S segment | 1.000 | 11.321 | 0.522 | 0.522 | 18.495 | 1.000 | 0.306 | 0.194 | 0.221 | 0.279 |