|  |  |  |  | Week 40 | Week ~75 | ||||
---|---|---|---|---|---|---|---|---|---|---|
Infecting variant | Animal | Set point viral load1 (log10 copies/mL) | NtAb2 peak IC50 | Diversity3 | Mean Divergence4 (Range) | Mean dN/dS | Diversity3 | Mean Divergence4(Range) | Mean dN/dS | |
"Early" | SIVMneCL8 | J95155 | 3.2 | 759 | 0.40 | 0.2 (0–0.77) | 0.16 | 0.52 | 0.52 (0–2.00) | 1.07 |
 |  | F95274 | 3.8 | 1133 | 0.38 | 0.2 (0–0.51) | 0.17 | 1.39 | 0.69 (0–1.35) | 0.54 |
 |  | Average | 3.5 | 946 | 0.39 | 0.20 | 0.16 | 0.96 | 0.60 | 0.81 |
"Intermediate" | SIVMne35wkSU | J95251 | 5.1 | 20 |  |  |  | 1.05 | 0.85 (0–1.48) | 1.02 |
 |  | J96165 | 6.1 | 53 | 1.20 | 0.71 (0.38–1.21) | 0.96 | 1.73 | 1.49 (0.90–3.01) | 1.22 |
 |  | Average | 5.6 | 36.5 | 1.20 | 0.71 | 0.91 | 1.39 | 1.17 | 1.12 |
"Late" | SIVMne170 | F94393 | 6.9 | 1229 | 0.68 | 0.79 (0.51–1.17) | 1.09 | 1.51 | 1.26 (0.13–2.00) | 1.33 |
 |  | J94233 | 6.5 | 266 | 1.22 | 1.28 (0.89–1.57) | 1.93 | 2.32 | 2.18 (0.38–3.28) | 1.57 |
 | SIVMne027 | J94454 | 7.0 | 1278 | 1.03 | 0.7 (0.13–1.16) | 0.67 | 1.32 | 0.91 (0.51–1.43) | 1.00 |
 |  | K94379 | 6.9 | 1517 | 1.27 | 1 (0.77–1.29) | 1.16 | 1.59 | 1.4 (0.51–2.40) | 1.07 |
 |  | Average | 6.8 | 1072.5 | 1.05 | 0.94 | 1.21 | 1.69 | 1.44 | 1.24 |