Table 4 Simplification of Table 3 by removal of slightly overlapping mIMRs
Rank | mIMR | prot | len | DNA positions | AA positions | Structure or function |
|---|---|---|---|---|---|---|
1 | #1-gag | MA | 95 | 0270-aa..ca-0364 | 091-RI..DT-122 | MA-H5 related to viral entry |
2 | #2-gag | CA | 87 | 0742-gg..tg-0828 | 248-GW..RM-276 | CA-H7 longest constituent of viral core |
3 | #3-gag | p1 | 85 | 1256-aa..aa-1340 | 419-EG..GN-447 | end NC, p1 to p1-p6 cleavage site |
4 | #6-gag | NC | 81 | 1171-aa..ga-1251 | 391-KC..CG-417 | 1st cys-his box; EF1α binding |
5 | #7-gag | p2 | 80 | 1065-ac..ca-1144 | 356-PG..GN-382 | p2, critical to budding |
6 | #10-gag | CA | 76 | 0812-at..ta-0887 | 271-NK..DY-296 | major homology region |
7 | #11-gag | CA | 75 | 0920-ag..ga-0994 | 307-EQ..KT-332 | endocytosis signal 1; CA-H9 helix |
8 | #14-gag | CA | 69 | 0985-ga..ag-1053 | 329-DC..QG-351 | endocytosis signal 2; CA-H10 helix |
9 | #15-gag | CA | 64 | 0543-ca..aa-0606 | 181-PQ..LK-202 | CA-H3-H4 helices, part of viral core |
10 | #17-gag | NC | 64 | 1362-gc..ag-1425 | 455-PT..QK-475 | L-domain (budding); Tsg101 |
455-PT..QK-475 | docking; ubiquitin-gag conjugate | |||||
11 | #1-NC | NC | 59 | 1209-aa..aa-1267 | 404-NC..QM-423 | 2cd cys-his box; end NC |
12 | #2-NC | NC | 47 | 1153-aa..ca-1199 | 385-NQ..GH-400 | EF1α binding |