Table 3 Gammaherpesviruses identified and/or characterized using CODEHOP-based PCR assays targeting the herpesvirus DNA polymerase (see legend to Table 2)
Virus species1 | Abbrev.1 | Host | Strain | Assay | Accession (#aa) | Reference |
|---|---|---|---|---|---|---|
Gammaherpesvirus-1 | ||||||
Bovine lymphotrophic HV | BLHV | Cow | DFA-IYG4 | AAC59451 (160aa) | [36] | |
Callitrichine HV-3 | CalHV3 | Marmoset | TGV-IYG | AAF05882 (58aa) | Unpublished | |
Leoporid HV-2 | LeHV2 | Rabbit | TGV-IYG | AAC55655 (54aa) | [8] | |
Rhesus lymphocryptovirus-1 (cercopithecine HV-15) | MmuLCV1 | Macaque mulatta | DFASA-GDTD1B TGV-IYG | This study AF091053 | This study Unpublished | |
Rhesus lymphocryptovirus-2 | MmuLCV2 | Macaque mulatta | DFASA-GDTD1B | This study | ||
HV papio (cercopithecine HV-12) | HVP | Baboon | TGV-IYG | AAF05878 (58aa) | Unpublished | |
Ovine HV 2 | OHV2 | Sheep | DFA-IYG | AAC59455 (161aa) | [36] | |
Porcine lymphotrophic virus-1a | PLHV1a | Pig | 56 | DFA-IYG | AAD26258 (155aa) | [40] |
Porcine lymphotrophic virus-1b | PLHV1b | Pig | 68 | DFA-IYG | AAD26257 (155aa) | [40] |
Saimiriine HV-3 | SaHV3 | S. American squirrel monkey | TGV-IYG | AAF98285 (57aa) | Unpublished | |
Zalophus californianus HV | ZcaHV | Sea lion | TGV-IYG | AAF07188 (55aa) | Unpublished | |
Gammaherpesvirus-2 | ||||||
Alcelaphine HV-1 | AlHV1 | Wildebeest | TGV-IYG | AAC59452 (58aa) | [36] | |
Alcelaphine HV-2 | AlHV2 | Hartebeest | TGV-IYG | AAG21352 (58aa) | Unpublished | |
Caprine HV-2 | CapHV2 | Goat | TGV-IYG | AAG21351 (59aa) | Unpublished | |
Caprine lymphotropic HV | CapLHV | Goat | TGV-IYG | AAG10783 (58aa) | Unpublished | |
Deer malignant catarrhal fever virus | DMCFV | Deer | TGV-IYG | AAD56945 (59aa) | [41] | |
Ateline HV-2 | AtHV2 | S. American spider monkey | TGV-IYG | AAC55644 (55aa) | [8] | |
Bovine HV-4 | BHV4 | Cow | DFA-IYG | AAC59454 (156aa) | [36] | |
Callitrichine HV-1 | CalHV1 | Marmoset | TGV-IYG | AAC55645 (55aa) | [8] | |
Chlorocebus rhadinovirus-1 | ChRV1 | African green monkey | Z8 | QAHNA-GDTD1B5 | CAB61753 (151aa) | [19] |
Chlorocebus rhadinovirus-2 | ChRV2 | African green monkey | L1 | QAHNA-GDTD1B | CAB61754 (151aa) | [19] |
Equine HV-2 | EHV2 | Horse | TGV-IYG | AAC55648 (55aa) | [8] | |
Equine HV-5 | EHV5 | Horse | TGV-IYG6 | AAD30141 (56aa) | [17] | |
Gorilla rhadinoherpesvirus 1 | gorRHV1 | Gorilla | GorGabOmo | DFASA-GDTD1B | AAG23218 (158aa) | [24] |
Kaposi's sarcoma-associated HV (HHV8) | KSHV | Human | KS187 | DFASA-GDTD1B | AAC57974 (151aa) | [9] [10] |
Macaque fascicularis rhadinovirus-2 (Macaque fascicularis gamma virus) | MfaRV2 | Macaque fascicularis | DFASA-GDTD1B | AAF23082 (158aa) | [42] | |
Macaque nemestrina rhadinovirus-2 | MneRV2 | Macaque nemestrina | Mne442N | DFASA-GDTD1B | AAF81664 (158aa) | [10] |
Mandrill rhadinoherpesvirus-1 | MndRHV1 | Mandrill sphinx | Mnd15 | DFASA-GDTD1B | AAG39066 (158aa) | [22] |
Mandrill rhadinoherpesvirus-2 | MndlRHV2 | Mandrill leucophaeus | Mnd205 | DFASA-GDTD1B | AAG39061 (158aa) | [22] |
Mandrill rhadinoherpesvirus-2 | MndsRHV2 | Mandrill sphinx | Mnd13 | DFASA-GDTD1B | AAG39060 (158aa) | [22] |
Pan troglodytes rhadinoherpesvirus-1a | panRHV1a | Chimpanzee | PanCamDja | DFASA-GDTD1B | AAG23140 (158aa) | [24] |
Pan troglodytes rhadinoherpesvirus-1b | panRHV1b | Chimpanzee | PanCamEko | DFASA-GDTD1B | AAG23142 (158aa) | [24] |
Retroperitoneal fibromatosis HVMm | RFHVMm | Macaque mulatta | MmuYN91-224 | QAHNA-GDTD1B | AAC57976 (151aa) | [9] [10] |
Retroperitoneal fibromatosis HVMn | RFHVMn | Macaque nemestrina | Mne442N | DFASA-GDTD1B | AAF81662 (158aa) | [9] [10] |
Rhesus rhadinovirus (Macaque mulatta gamma virus) | RRV | Macaque mulatta | DFASA-GDTD1B | AAF23083 (158aa) | [42] | |
Tapirus terrestris HV | TteHV | Tapir | TGV-IYG6 | AAD30142 (55aa) | [17] | |
Equus somalicus HV | EsoHV | Wild ass | TGV-IYG6 | AAD30143 (57aa) | [17] | |
Equus zebra HV | EzeHV | Zebra | TGV-IYG6 | AAD30144 (55aa) | [17] |