CODEHOP-mediated PCR – A powerful technique for the identification and characterization of viral genomes

Rose, Timothy M

doi:10.1186/1743-422X-2-20

Virology Journal

Table 2 Alpha- and Betaherpesviruses identified and/or characterized using CODEHOP-based PCR assays targeting the herpesvirus DNA polymerase

From: CODEHOP-mediated PCR – A powerful technique for the identification and characterization of viral genomes

Virus species¹	Abbrev.¹	Host	Strain	Assay	Accession (#aa)	Reference
Alphaherpesvirus
Bovine HV-2	BHV2	Cow		TGV-IYG²	AAC59453 (59aa)	[36]
Canid HV-1	CHV1	Dog	D004	TGV-IYG	AAC55646 (60aa)	[8]
Caretta caretta HV	CcaHV	Florida loggerhead turtle		TGV-IYG	AAD24564 (60aa)	[37]
Chelonia mydas HV-Florida	CmyHVf	Florida green turtle		TGV-IYG DFASA-GDTD1B³	AAD24565 (60aa) AAC26682 (161aa)	[37] [38]
Chelonia mydas HV-Hawaii	CmyHVh	Hawaiin green turtle		DFASA-GDTD1B	AAC26681 (161aa)	[38]
Equid HV-3	EHV3	Horse	C-175	TGV-IYG	AAD30140 (59aa)	[17]
Felid HV-1	FHV1	Cat	C-27	TGV-IYG	AAC55649 (60aa)	[8]
Infectious laryngotracheitis virus (Gallid HV-1)	ILTV	Chicken	N-71851	TGV-IYG	AAC55650 (59aa)	[8]
Marek's disease virus (Gallid HV-3)	MDV	Chicken	GA5	TGV-IYG	AAC55651 (59aa)	[8]
Lepidochelys olivacea HV	LolHV	Olive ridley turtle		DFASA-GDTD1B	AAC26684 (161aa)	[38]
Psittacid HV-1	PsiHV1	Parrot	RSL-1	TGV-IYG	AAC55656 (59aa)	[8]
Saimiriine HV-1	SaHV1	S. American squirrel monkey	MV-5-4	TGV-IYG	AAC55657 (60aa)	[8]
Tursiops truncatus HV-1	TtrHV1	Bottlenose dolphin	Heart	TGV-IYG²	AAF62170 (60aa)	Unpublished
Tursiops truncatus HV-2	TtrHV2	Bottlenose dolphin	Lung	TGV-IYG	AAF07208 (63aa)	Unpublished
Betaherpesvirus
African elephant endotheliolytic virus	Afeev	African elephant	Case 2	TGV-IYG	AAD24549 (60aa)	[39]
Asian elephant endotheliolytic virus	Aseev	Asian elephant	Case 3	TGV-IYG	Not Deposited (60aa)	[39]
Aotine HV-1	AoHV1	Owl monkey	S43E	TGV-IYG	AAC55643 (57aa)	[8]
Chlorocebus aethiops cytomegalovirus (Cercopithecine HV-5)	CaeCMV	African green monkey	CSG	TGV-IYG	AAC55647 (57aa)	[8]
Mandrill cytomegalovirus	MndCMV	Mandrill leucophaeus	Mnd205	DFASA-GDTD1B	AAG39064 (157aa)	[22]
Mandrill HV β	MndHVβ	Mandrill sphinx	Mnd301	DFASA-GDTD1B	AAG39065 (159aa)	[22]

¹Names and abbreviations are usually derived from the original publications although some have been modified to conform to a three letter code derived from the first letter of the genus and the first two letters of the species, ie. Macaca mulatta = Mmu. This was necessary due to the number of different viral species and hosts which could not be distinguished with a two letter code.
²Reference [8]
³ Reference [9]
⁴ Reference [17]
⁵ Reference [10]
⁶ Primers modified (see reference)

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ISSN: 1743-422X

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