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Fig. 3 | Virology Journal

Fig. 3

From: Uncovering neglected subtypes and zoonotic transmission of Hepatitis E virus (HEV) in Brazil

Fig. 3

Phylogenetic tree based on nucleotide sequences of nearly complete genomic sequences, including 747 HEV genotype 3 sequences. To improve visualization, subtype branches are collapsed, hence sequences RJsw3 and RJsw4 clustering into subtype 3b and PEsw1 clustering into subtype 3f are omitted. Detailed information, including all sequences used, the alignment, and the complete tree, is available in the supplementary material. SH-aLRT/aBayes/ultrafast bootstrap supports values of ≥ 0.80 were replaced by a circle. Reference sequences for HEV-3 subtypes including the remaining unssined(un) HEV-3 sequences: AF082843 (3a), AP003430 (3b), FJ705359 (3c), AB248521(3e), AB369687(3f), AF455784 (3g), JQ013794 (3h), FJ998008 (3i), AY115488 (3j), AB369689 (3k), JQ953664 (3l), KU513561(3m), FJ906895 (3ra); unassigned sequences are AB290313, MF959765, LC260517, MK390971, MF959764, KP294371

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