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Table 7 Results of molecular docking

From: Screening and identification of cyprinid herpesvirus 2 (CyHV-2) ORF55-interacting proteins by phage display

Receptor

Ligand

ZDOCK socre

Hydrogen bond interaction

Electrostatic interaction

PROK2 (1IMT)

CSF3 (2D9Q)

− 85.085

B:ARG167:NH1-A:ASP109:OD1,

A:LYS16:NZ-B:ASP197:OD1,

   

B:ARG167:NH2-A:ASP112:OD1,

A:LYS16:NZ-B:ASP200:OD1,

   

B:ARG288:NH2-A:GLU19:OE1,

B:ARG167:NH1-A:ASP112:OD2,

   

A:HOH177:O-A:PRO65:O…

B:ARG288:NH1-A:GLU19:OE2,

    

A:LEU15-B:LEU291

  1. Rigid protein–protein docking (ZDOCK) was performed between PROK2 and CSF3 to study the relationships. The ZDOCK module was run to identify the docking sites and calculate the ZDOCK scores
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Virology Journal

ISSN: 1743-422X