Table 1 Overview of the sequencing results of HPV 51/52/59 positive cervical-cell samples and SARS-CoV-2 positive samples

Virus type

# of samples

Mean # of raw reads (mil)

Mean # of trimmed reads (mil)

Mean # of reads mapped to target (mil)

Mean % raw reads mapped to target (%)

Mean % trimmed reads mapped to target (%)

Mean coverage per sample

Mean % of genome covered by minimum

Variable sites in samples passing 300× mean coverage

10x (%)

100x (%)

Mean

Min

Max

Mean # of variable sites per 1 kb of genome