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Table 3 The list of human- and bat-type oligonucleotides

From: Oligonucleotide usage in coronavirus genomes mimics that in exon regions in host genomes

 

Human-type

Bat-type

Di

AA, AU, GU, UA, UU

AC, CA, CC, CG, GA, GC, GG

Tri

AAA, AAU, AGU, AUA, AUU, GUA, GUU, UAA, UAG, UAU, UGA, UGU, UUA, UUG, UUU

ACC, ACG, AGC, CAC, CAG, CCA, CCC, CCG, CGA, CGC, CGG, CGU, GAC, GAG, GCA, GCC, GCG, GCU, GGC, GUC, UCG, UGC

Tetra

AAAA, AAAU, AAGU, AAUA, AAUC, AAUG, AAUU, AGUA, AGUU, AUAA, AUAC, AUAG, AUAU, AUCU, AUGU, AUUA, AUUC, AUUG, AUUU, CUAA, GAAU, GAUA, GAUU, GGUA, GGUU, GUAA, GUAU, GUUA, GUUG, GUUU, UAAA, UAAG, UAAU, UACU, UAGA, UAGU, UAUA, UAUC, UAUG, UAUU, UGAU, UGUA, UGUU, UUAA, UUAG, UUAU, UUGA, UUGG, UUGU, UUUA, UUUG, UUUU

AACG, AAGG, ACCA, ACCC, ACCG, ACCU, ACGA, ACGC, ACGG, ACGU, AGCA, AGCC, AGCG, AUCG, CAAC, CAAG, CACC, CACG, CAGA, CAGC, CAUC, CCAA, CCAC, CCAG, CCCC, CCCG, CCGA, CCGC, CCGG, CCGU, CCUG, CGAA, CGAC, CGAG, CGAU, CGCA, CGCC, CGCG, CGCU, CGGA, CGGC, CGGG, CGGU, CGUC, CGUG, CGUU, CUAC, CUCG, CUGC, CUGG, CUUC, GAAC, GAAG, GACA, GACC, GACG, GAGA, GAGC, GAGG, GCAC, GCAG, GCCA, GCCC, GCCG, GCGA, GCGC, GCGG, GCGU, GCUC, GCUG, GGAC, GGAG, GGCA, GGCC, GGCG, GGGC, GGUC, GUAC, GUCC, GUCG, GUGC, GUGG, UACC, UACG, UCCA, UCCG, UCGA, UCGC, UCGG, UCGU, UGCC, UGCG, UGCU, UGGC, UUCG

  1. Underlined oligonucleotides indicate those in SARS-CoV-2 with a frequency closer to human-CoV than to bat-CoV at the beginning of the epidemic