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Table 1 The list of oligonucleotides with significant differences in frequency between human-CoV and bat-CoV

From: Oligonucleotide usage in coronavirus genomes mimics that in exon regions in host genomes

 

Preferred in human-CoV

Preferred in Bat-CoV

Di

AA, AU, GU, UA, UG, UU

AC, AG, CA, CC, CG, CU, GA, GC, GG, UC

Tri

AAA, AAG, AAU, AGU, AUA, AUG, AUU, GAU, GUA, GUU, UAA, UAG, UAU, UGA, UGU, UUA, UUG, UUU

AAC, ACA, ACC, ACG, ACU, AGC, AGG, CAA, CAC, CAG, CAU, CCA, CCC, CCG, CCU, CGA, CGC, CGG, CGU, CUA, CUC, CUG, CUU, GAA, GAC, GAG, GCA, GCC, GCG, GCU, GGC, GGG, GUC, GUG, UAC, UCA, UCC, UCG, UCU, UGC, UUC

Tetra

AAAA, AAAG, AAAU, AAGC, AAGU, AAUA, AAUC, AAUG, AAUU, AGAU, AGUA, AGUU, AUAA, AUAC, AUAG, AUAU, AUCU, AUGA, AUGG, AUGU, AUUA, AUUC, AUUG, AUUU, CUAA, GAAU, GAUA, GAUC, GAUG, GAUU, GGAU, GGUA, GGUU, GUAA, GUAU, GUGU, GUUA, GUUG, GUUU, UAAA, UAAG, UAAU, UACU, UAGA, UAGU, UAUA, UAUC, UAUG, UAUU, UGAU, UGGA, UGGU, UGUA, UGUU, UUAA, UUAG, UUAU, UUGA, UUGG, UUGU, UUUA, UUUG, UUUU

AAAC, AACA, AACC, AACG, AACU, AAGG, ACAA, ACAC, ACAG, ACAU, ACCA, ACCC, ACCG, ACCU, ACGA, ACGC, ACGG, ACGU, ACUA, ACUC, ACUG, ACUU, AGAC, AGAG, AGCA, AGCC, AGCG, AGCU, AGGC, AGGG, AGGU, AGUC, AGUG, AUCC, AUCG, CAAA, CAAC, CAAG, CAAU, CACA, CACC, CACG, CACU, CAGA, CAGC, CAGG, CAGU, CAUC, CAUG, CCAA, CCAC, CCAG, CCAU, CCCA, CCCC, CCCG, CCCU, CCGA, CCGC, CCGG, CCGU, CCUA, CCUC, CCUG, CCUU, CGAA, CGAC, CGAG, CGAU, CGCA, CGCC, CGCG, CGCU, CGGA, CGGC, CGGG, CGGU, CGUA, CGUC, CGUG, CGUU, CUAC, CUAG, CUAU, CUCA, CUCC, CUCG, CUCU, CUGA, CUGC, CUGG, CUGU, CUUA, CUUC, CUUG, CUUU, GAAC, GAAG, GACA, GACC, GACG, GACU, GAGA, GAGC, GAGG, GCAA, GCAC, GCAG, GCCA, GCCC, GCCG, GCCU, GCGA, GCGC, GCGG, GCGU, GCUC, GCUG, GCUU, GGAA, GGAC, GGAG, GGCA, GGCC, GGCG, GGCU, GGGA, GGGC, GGGU, GGUC, GGUG, GUAC, GUCA, GUCC, GUCG, GUCU, GUGA, GUGC, GUGG, UAAC, UACA, UACC, UACG, UCAA, UCAC, UCAG, UCAU, UCCA, UCCC, UCCG, UCCU, UCGA, UCGC, UCGG, UCGU, UCUA, UCUC, UCUG, UGAC, UGAG, UGCA, UGCC, UGCG, UGCU, UGGC, UGGG, UGUC, UUAC, UUCA, UUCC, UUCG, UUGC, UUUC