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Table 1 Primers used in this study

From: A novel weevil-transmitted tymovirus found in mixed infection on hollyhock

Name

Sequence

Use

References

CIFor

GGIVVIGTIGGIWSIGGIAARTCIAC

Potyvirus generic detection

[28]

CIRev

ACICCRTTYTCDATDATRTTIGTIGC

TymZ-F

GGSCCMGTSAARAARTAYCA

Tymovirus generic detection

[29]

TymZ-R

GCCAGRTTGTARTCRGRGTTG

CarF2b

GGRCTDGGDGTVCCNACTGA

Carlavirus generic detection

[30]

CarR

CCWCATYSRCTCSRCTWTGG

TymoFinalF

CCCTACACCACGTCCCATTC

AYMV assembly gap & detection

This study

TymoFinalR

CAAGTGGGGTCGGTCAGAAG

Seq5two

GATGGCCCAGGGAAGTTCTG

AYMV 5’ terminus

Tymo5closer

TCCGTGACCATCTCTGGAGT

AYMV 3’ terminus

AnchoredPolyA

A22BNN

Carla_GLV_For

GGTACAGGAATTGGCTGGCT

GLV detection

Carla_GLV_Rev

TTCCAATACTGACGGCTCGG

Poty_Malva_Fwd

GAACCAACACGACCACTTGC

Novel potyvirus detection

Poty_Malva_Rv

AGTGTGGGTTGGCTGAAGTT

  1. I = inosine, Y = C/T, B = C/G/T, R = G/A, W = A/T, V = A/C/G, S = C/G and D = A/G/T