Fig. 2
From: A novel weevil-transmitted tymovirus found in mixed infection on hollyhock
Characterization of AYMV genome. a Base content for the gRNA of tymoviruses (box plots) and AYMV (black points). b Schematic representation of AYMV gRNA. ORFs are represented as colored boxes with associated positions and conserved domains/functions (see main text for details). The putative RP cleavage sites are indicated by gray arrows. The protonable hairpin (PH), tymobox and valine tRNA-like structure (ValTLS) are indicated by vertical gray lines. c Alignment of the tymobox cDNA for AYMV and selected related species. d Alignment of the 3’-UTR cDNA for the same viruses described in Fig. 2c. The structural annotations are reproduced from a previous analysis of tymoviral tRNA (52). Colored background indicate ≥ 75% conservation. Full virus names and accession numbers are listed in Additional file 1: Table S1