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Table 1 Primers sequences for expression study of TLRs, cytokines and chemokines

From: Exaggerated levels of some specific TLRs, cytokines and chemokines in Japanese encephalitis infected BV2 and neuro 2A cell lines associated with worst outcome

Gene name

Primer sequence (5’-3’)

Location

Gene bank ID

TLR-2

F-GCAAACGCTGTTCTGCTCAG

56–75

NM_011905

 

R-AGGCGTCTCCCTCTATTGTATT

286–265

 

TLR-4

F-AGGCACATGCTCTAGCACTAA

287–307

NM_021297

 

R-AGGCTCCCCAGTTTAACTCTG

368–348

 

TLR-9

F-ATGGTTCTCCGTCGAAGGACT

1–21

NM_031178

 

R-GAGGCTTCAGCTCACAGGG

118–100

 

IFN-γ

F-ATGAACGCTACACACTGCATC

1–21

NM_008337

 

R-CCATCCTTTTGCCAGTTCCTC

182–162

 

IL-6

F-CCAAGAGGTGAGTGCTTCCC

462–481

NM_031168

 

R-CTGTTGTTCAGACTCTCTCCCT

579–558

 

IL-17

F-TCT GAT GCT GTT GCT GCT G

87–105

NM_010552.3

 

R-ACG GTT AGA GGT AGT CTG AGG

254–267

 

IL-21

F-GGACCCTTGTCTGTCTGGTAG

8–28

NM_021782

 

R-TGTGGAGCTGATAGAAGTTCAGG

173–151

 

Foxp3 + regulatory T cells

F- GGC CCT TCT CCA GGA CAG A

551–570

NM_054039.2

 

R-GCT GAT CAT GGC TGG GTT GT

642–662

 

RANTES(CCL-5)

F-GCTGCTTTGCCTACCTCTCC

98–117

NM_013653

 

R-TCGAGTGACAAACACGACTGC

201–181

 

MCP-1(CCL-2)

F-TTAAAAACCTGGATCGGAACCAA

260–282

NM_01133 3

 

R-GCATTAGCTTCAGATTTACGGGT

380–358

 

β-actin

F-TGG AAT CCT GTG GCA TCC ATG AAA C

885–909

NM_007393.3

 

R-TAA AAC GCA GCT CAG TAA CAG TCC G

1209–1233

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