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Table 1 Oligonucleotides used in the study

From: Emergence of equine influenza virus H3Nx Florida clade 2 in Arabian racehorses in Egypt

Name

Sequence (5ʹ–3ʹ)

Position*

References

qHA3F

TCACATGGACAGGTGTCACTCA

448–469

Lu et al. [26]

qHA3R

GGCTGATCCCCTTTTGCA

485–506

 

qHA3 probe

FAM-AACGGAAGAAGTGGAGC-BHQ1

471–487

 

HA3DF

CACCATGAMGACAACCATTATTTTGATACTAC

4up–28

Ahmed et al. [27]

H31R

CCGGTATTGCTCCAAAGATTCC

1039–1056

 
  1. The term ‘up’ indicates upstream of HA gene start codon
  2. FAM: Fluorescein, BHQ-1: Blackhole quencher
  3. *Nucleotide positions relative to hemagglutinin gene (HA) sequence