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Table 1 Nucleotide changes associated with the 69/70 codon deletion of spike of SARS CoV-2 for BA.1 and BA.2 variants and for BA.1 variant with C21772T mutation

From: Case report: BA.1 subvariant showing a BA.2-like pattern using a variant-specific PCR assay due to a single point mutation downstream the spike 69/70 deletion

Variant

Nucleotide sequence (21,761–21,775)

(codons 67–71)

Amino acid sequence (spike 67–71)

Wuhan-Hu-1

GCTATACATGTCTCT

AIHVS

BA.1

GTTA‒‒‒‒‒‒TCTCT

VI‒‒S

BA.1 + C21772T

GTTA‒‒‒‒‒‒TTTCT

VI‒‒S

BA.2

GCTATACATGTCTCT

AIHVS