Table 2 Occurrence of mixed viral infections in field-grown soybean samples collected across the USA
From: Detection and discovery of plant viruses in soybean by metagenomic sequencing
Sample Identity (ID) | State | Year Collected | Mixed Viruses Identified | Blast Hits to Isolates Identified in this Study | Nucleotide Identity (%) |
|---|---|---|---|---|---|
S6 | Iowa | 2017 | Alfalfa mosaic virus | IA-2017 | 99.8 |
S6 | Iowa | 2017 | Bean pod mottle virus | IA-2-2017 | 100 |
S11 | Iowa | 2017 | Tobacco streak virus | IA-3-2017 | 100 |
S11 | Iowa | 2017 | Tobacco ringspot virus | IA-2-2017 | 100 |
S12 | Iowa | 2017 | Alfalfa mosaic virus | IA-2017 | 99.8 |
S12 | Iowa | 2017 | Tobacco ringspot virus | IA-1-2017 | 100 |
S13 | Iowa | 2017 | Alfalfa mosaic virus | IA-2017 | 99.8 |
S13 | Iowa | 2017 | Tobacco ringspot virus | IA-2-2017 | 100 |
S18 | Iowa | 2018 | Alfalfa mosaic virus | IA-4-2018 | 100 |
S18 | Iowa | 2018 | Tobacco streak virus | IA-2-2018 | 99.9 |
S20 | Iowa | 2018 | Alfalfa mosaic virus | IA-1-2018 | 99.9 |
S20 | Iowa | 2018 | Soybean dwarf virus | IA-1-2018 | 100 |
S21 | Iowa | 2018 | Tobacco streak virus | IA-2-2018 | 99.9 |
S21 | Iowa | 2018 | Soybean dwarf virus | IA-2-2018 | 100 |
S24 | Iowa | 2018 | Alfalfa mosaic virus | IA-1-2018 | 99.9 |
S24 | Iowa | 2018 | Tobacco streak virus | IA-2-2018 | 99.9 |
S25 | Iowa | 2018 | Alfalfa mosaic virus | IA-1-2018 | 99.9 |
S25 | Iowa | 2018 | Tobacco streak virus | IA-2-2018 | 99.9 |
S26 | Iowa | 2018 | Alfalfa mosaic virus | IA-1-2018 | 99.9 |
S26 | Iowa | 2018 | Tobacco streak virus | IA-2-2018 | 99.9 |
S31 | Indiana | 2016 | Soybean vein necrosis virus | IN-3-2016 | 100 |
S31 | Indiana | 2016 | Tobacco streak virus | WI-2016 | 97.8 |
S34 | Maryland | 2016 | Soybean vein necrosis virus | MD-2016 | 98 |
S34 | Maryland | 2016 | Tobacco streak virus | MD-2016 | 100 |
S37 | Alabama | 2016 | Soybean vein necrosis virus | AL-3-2016 | 100 |
S37 | Alabama | 2016 | Tobacco streak virus | WI-2016 | 97.8 |
S40 | Ohio | 2017 | Soybean vein necrosis virus | MD-2016 | 98 |
S40 | Ohio | 2017 | Alfalfa mosaic virus | OH-2-2017 | 100 |