From: Detection and discovery of plant viruses in soybean by metagenomic sequencing
Sample ID | Iowa county | Year | Symptoms✝ | Virus identified and GenBank accession number | Assigned name |
---|---|---|---|---|---|
S1 | Story | 2016 | Chlorosis | Clover Yellow Vein Virus (ClYVV) [MK292120] | IA-2016 |
S2 | Story | 2016 | Virus-like | Soybean dwarf virus (SbDV) [MT526793] | IA-2016 |
S3 | Story | 2016 | Virus-like | Tobacco streak virus (TSV, RNA1) [MT596818] Tobacco streak virus (TSV, RNA2) [MT596819] Tobacco streak virus (TSV, RNA3) [MT596820] | IA-2016 |
S4 | Marion | 2017 | Bud proliferation | Alfalfa mosaic virus (AMV, RNA1) [MT596806] Alfalfa mosaic virus (AMV, RNA2) [MT596807] Alfalfa mosaic virus (AMV, RNA3) [MT596808] | IA-2017 |
S5 | No data | 2017 | Corky stem | Bean pod mottle virus (BPMV, RNA1) [MT521477] Bean pod mottle virus (BPMV, RNA2) [MT521478] | IA-2017 |
S6 | No data | 2017 | Rugose leaves | Bean pod mottle virus (BPMV, RNA1) [MT669389] Bean pod mottle virus (BPMV, RNA2) [MT669390] | IA-2-2017 |
S7 | Washington | 2017 | mosaic, vein clearing | Clover Yellow Vein Virus (ClYVV) [MK318185] | IA-2017 |
S8 | No data | 2017 | Virus-like | Soybean dwarf virus (SbDV) [MT526794] | IA-2017 |
S9 | No data | 2017 | Virus-like | Tobacco streak virus (TSV, RNA1) [MT602528] Tobacco streak virus (TSV, RNA2) [MT602529] Tobacco streak virus (TSV, RNA3) [MT602530] | IA-1-2017 |
S10 | Story | 2017 | leaf puckering | Tobacco streak virus (TSV, RNA1) [MT602531] Tobacco streak virus (TSV, RNA2) [MT602532] Tobacco streak virus (TSV, RNA3) [MT602533] | IA-2-2017 |
S11 | No data | 2017 | Virus-like | Tobacco streak virus (TSV, RNA1) [MT669383] Tobacco streak virus (TSV, RNA2) [MT669384] Tobacco streak virus (TSV, RNA3) [MT669385] | IA-3-2017 |
S12 | No data | 2017 | Chlorosis, mottling | Tobacco ringspot virus (TRSV, RNA1) [MT563078] Tobacco ringspot virus (TRSV, RNA2) [MT563079] | IA-1-2017 |
S13 | No data | 2017 | Mottling, stunted plant | Tobacco ringspot virus (TRSV, RNA1) [MT563080] Tobacco ringspot virus (TRSV, RNA2) [MT563081] | IA-2-2017 |
S14 | Lee | 2017 | Bud proliferation | Tobacco ringspot virus (TRSV, RNA1) [MT563082] Tobacco ringspot virus (TRSV, RNA2) [MT563083] | IA-3-2017 |
S15 | Story | 2018 | Brown vein and necrosis | Alfalfa mosaic virus (AMV, RNA1) [MT596809] Alfalfa mosaic virus (AMV, RNA2) [MT596810] Alfalfa mosaic virus (AMV, RNA3) [MT596811] | IA-1-2018 |
S16 | Boone | 2018 | Chlorosis, especially near the veins | Alfalfa mosaic virus (AMV, RNA1) [MT596812] Alfalfa mosaic virus (AMV, RNA2) [MT596813] Alfalfa mosaic virus (AMV, RNA3) [MT596814] | IA-2-2018 implePara> |
S17 | Boone | 2018 | Chlorosis, especially near the veins | Alfalfa mosaic virus (AMV, RNA1) [MT596815] Alfalfa mosaic virus (AMV, RNA2) [MT596816] Alfalfa mosaic virus (AMV, RNA3) [MT596817] | IA-3-2018 |
S18 | Boone | 2018 | Chlorosis, rugose | Alfalfa mosaic virus (AMV, RNA1) [MT669391] Alfalfa mosaic virus (AMV, RNA2) [MT669392] Alfalfa mosaic virus (AMV, RNA3) [MT669393] | IA-4-2018 |
S19 | Boone | 2018 | Interveinal chlorosis | Bean pod mottle virus (BPMV, RNA1) [MT526791] Bean pod mottle virus (BPMV, RNA2) [MT526792] | IA-2018 |
S20 | Story | 2018 | Interveinal chlorosis | Soybean dwarf virus (SbDV) [MT669394] | IA-1-2018 |
S21 | Story | 2018 | Interveinal chlorosis | Soybean dwarf virus (SbDV) [MT669395] | IA-2-2018 |
S22 | Story | 2018 | Chlorosis, puckering | Tobacco streak virus (TSV, RNA1) [MT602534] Tobacco streak virus (TSV, RNA2) [MT602535] Tobacco streak virus (TSV, RNA3) [MT602536] | IA-1-2018 |
S23 | Story | 2018 | Chlorosis, puckering | Tobacco streak virus (TSV, RNA1) [MT602537] Tobacco streak virus (TSV, RNA2) [MT602538] Tobacco streak virus (TSV, RNA3) [MT602539] | IA-2-2018 |
S24* | Story | 2018 | Chlorosis, early senescence, necrosis on pods | Alfalfa mosaic virus (AMV) Tobacco streak virus (TSV) | – |
S25* | Story | 2018 | Interveinal chlorosis | Alfalfa mosaic virus (AMV) Tobacco streak virus (TSV) | – |
S26* | Hancock | 2018 | Chlorotic patches between veins | Alfalfa mosaic virus (AMV) Tobacco streak virus (TSV) | – |
S27 | Tama | 2019 | Yellowing and death of upper young leaves | Tobacco streak virus (TSV, RNA1) [MT602540] Tobacco streak virus (TSV, RNA2) [MT602541] Tobacco streak virus (TSV, RNA3) [MT602542] | IA-1-2019 |
S28 | Story | 2019 | Yellowing and death of upper young leaves | Tobacco streak virus (TSV, RNA1) [MT602543] Tobacco streak virus (TSV, RNA2) [MT602544] Tobacco streak virus (TSV, RNA3) [MT602545] | IA-2-2019 |
S78 | Story | 2016 | Virus-like | Soybean ilarvirus 1 (SIlV1, RNA1) [OL539723] Soybean ilarvirus 1 (SIlV1, RNA2) [OL539724] Soybean ilarvirus 1 (SIlV1, RNA3) [OL539725] | IA-2016 |