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Table 1 Sample location, year collected, associated symptoms, and viruses identified with their assigned GenBank accession numbers in field-grown soybean across Iowa, USA

From: Detection and discovery of plant viruses in soybean by metagenomic sequencing

Sample ID

Iowa county

Year

Symptoms✝

Virus identified and GenBank accession number

Assigned name

S1

Story

2016

Chlorosis

Clover Yellow Vein Virus (ClYVV) [MK292120]

IA-2016

S2

Story

2016

Virus-like

Soybean dwarf virus (SbDV) [MT526793]

IA-2016

S3

Story

2016

Virus-like

Tobacco streak virus (TSV, RNA1) [MT596818]

Tobacco streak virus (TSV, RNA2) [MT596819]

Tobacco streak virus (TSV, RNA3) [MT596820]

IA-2016

S4

Marion

2017

Bud proliferation

Alfalfa mosaic virus (AMV, RNA1) [MT596806]

Alfalfa mosaic virus (AMV, RNA2) [MT596807]

Alfalfa mosaic virus (AMV, RNA3) [MT596808]

IA-2017

S5

No data

2017

Corky stem

Bean pod mottle virus (BPMV, RNA1) [MT521477]

Bean pod mottle virus (BPMV, RNA2) [MT521478]

IA-2017

S6

No data

2017

Rugose leaves

Bean pod mottle virus (BPMV, RNA1) [MT669389]

Bean pod mottle virus (BPMV, RNA2) [MT669390]

IA-2-2017

S7

Washington

2017

mosaic, vein clearing

Clover Yellow Vein Virus (ClYVV) [MK318185]

IA-2017

S8

No data

2017

Virus-like

Soybean dwarf virus (SbDV) [MT526794]

IA-2017

S9

No data

2017

Virus-like

Tobacco streak virus (TSV, RNA1) [MT602528]

Tobacco streak virus (TSV, RNA2) [MT602529]

Tobacco streak virus (TSV, RNA3) [MT602530]

IA-1-2017

S10

Story

2017

leaf puckering

Tobacco streak virus (TSV, RNA1) [MT602531]

Tobacco streak virus (TSV, RNA2) [MT602532]

Tobacco streak virus (TSV, RNA3) [MT602533]

IA-2-2017

S11

No data

2017

Virus-like

Tobacco streak virus (TSV, RNA1) [MT669383]

Tobacco streak virus (TSV, RNA2) [MT669384]

Tobacco streak virus (TSV, RNA3) [MT669385]

IA-3-2017

S12

No data

2017

Chlorosis, mottling

Tobacco ringspot virus (TRSV, RNA1) [MT563078]

Tobacco ringspot virus (TRSV, RNA2) [MT563079]

IA-1-2017

S13

No data

2017

Mottling, stunted plant

Tobacco ringspot virus (TRSV, RNA1) [MT563080]

Tobacco ringspot virus (TRSV, RNA2) [MT563081]

IA-2-2017

S14

Lee

2017

Bud proliferation

Tobacco ringspot virus (TRSV, RNA1) [MT563082]

Tobacco ringspot virus (TRSV, RNA2) [MT563083]

IA-3-2017

S15

Story

2018

Brown vein and necrosis

Alfalfa mosaic virus (AMV, RNA1) [MT596809]

Alfalfa mosaic virus (AMV, RNA2) [MT596810]

Alfalfa mosaic virus (AMV, RNA3) [MT596811]

IA-1-2018

S16

Boone

2018

Chlorosis, especially near the veins

Alfalfa mosaic virus (AMV, RNA1) [MT596812]

Alfalfa mosaic virus (AMV, RNA2) [MT596813]

Alfalfa mosaic virus (AMV, RNA3) [MT596814]

IA-2-2018 implePara>

S17

Boone

2018

Chlorosis, especially near the veins

Alfalfa mosaic virus (AMV, RNA1) [MT596815]

Alfalfa mosaic virus (AMV, RNA2) [MT596816]

Alfalfa mosaic virus (AMV, RNA3) [MT596817]

IA-3-2018

S18

Boone

2018

Chlorosis, rugose

Alfalfa mosaic virus (AMV, RNA1) [MT669391]

Alfalfa mosaic virus (AMV, RNA2) [MT669392]

Alfalfa mosaic virus (AMV, RNA3) [MT669393]

IA-4-2018

S19

Boone

2018

Interveinal chlorosis

Bean pod mottle virus (BPMV, RNA1) [MT526791]

Bean pod mottle virus (BPMV, RNA2) [MT526792]

IA-2018

S20

Story

2018

Interveinal chlorosis

Soybean dwarf virus (SbDV) [MT669394]

IA-1-2018

S21

Story

2018

Interveinal chlorosis

Soybean dwarf virus (SbDV) [MT669395]

IA-2-2018

S22

Story

2018

Chlorosis, puckering

Tobacco streak virus (TSV, RNA1) [MT602534]

Tobacco streak virus (TSV, RNA2) [MT602535]

Tobacco streak virus (TSV, RNA3) [MT602536]

IA-1-2018

S23

Story

2018

Chlorosis, puckering

Tobacco streak virus (TSV, RNA1) [MT602537]

Tobacco streak virus (TSV, RNA2) [MT602538]

Tobacco streak virus (TSV, RNA3) [MT602539]

IA-2-2018

S24*

Story

2018

Chlorosis, early senescence, necrosis on pods

Alfalfa mosaic virus (AMV)

Tobacco streak virus (TSV)

S25*

Story

2018

Interveinal chlorosis

Alfalfa mosaic virus (AMV)

Tobacco streak virus (TSV)

S26*

Hancock

2018

Chlorotic patches between veins

Alfalfa mosaic virus (AMV)

Tobacco streak virus (TSV)

S27

Tama

2019

Yellowing and death of upper young leaves

Tobacco streak virus (TSV, RNA1) [MT602540]

Tobacco streak virus (TSV, RNA2) [MT602541]

Tobacco streak virus (TSV, RNA3) [MT602542]

IA-1-2019

S28

Story

2019

Yellowing and death of upper young leaves

Tobacco streak virus (TSV, RNA1) [MT602543]

Tobacco streak virus (TSV, RNA2) [MT602544]

Tobacco streak virus (TSV, RNA3) [MT602545]

IA-2-2019

S78

Story

2016

Virus-like

Soybean ilarvirus 1 (SIlV1, RNA1) [OL539723]

Soybean ilarvirus 1 (SIlV1, RNA2) [OL539724]

Soybean ilarvirus 1 (SIlV1, RNA3) [OL539725]

IA-2016

  1. *Indicates co-infections
  2. Samples lacking detailed symptom description or images are denoted as ‘Virus-like’