Fig. 2
From: Detection and discovery of plant viruses in soybean by metagenomic sequencing
Maximum likelihood phylogenetic tree showing the relationship of the ClYVV-IA isolates to other ClYVV isolates and BYMV. The phylogenetic tree was based on the amino acid sequences of ClYVV and Bean yellow mosaic virus (BYMV). BYMV is included as an outgroup. This analysis used the fully sequenced genomes available in GenBank, except for ClYVV isolate contig27.1 Ohio USA, which was a partial sequence. Sequences were aligned using MUSCLE, and the tree constructed from the alignment using PhyML. The tree branches were bootstrapped with 1000 replications. The de novo assembled ClYVV-IA genomes identified in this study, along with their respective accession number are denoted by the red text and (*) star