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Fig. 6 | Virology Journal

Fig. 6

From: Conserved RNA secondary structure in Cherry virus A 5′-UTR associated with translation regulation

Fig. 6

In-line structure probing of CVA 5′-UTR-Type-1. A Susceptibility of residues at the CVA 5′-UTR-Type-1 to in-line cleavage. OH, ladder generated from treatment with NaOH; Tm, partial RNaseT1 digest to denote location of guanosine; In-line, in-line cleavage of the fragment. The intensity of each band is proportional to the flexibility of the residue at that location. Green solid triangles point to the weaker cleavage sites, where as red solid triangles point to the stronger cleavage sites. CR, conserved sequence and RNA structure region. B Susceptibility of residues in the putative structure of CVA 5′-UTR-Type-1 to in-line cleavage. Green and red nucleotides indicate the single-strand characteristic, whereas red nucleotides indicate strongly marked cleavage based on the in-line probing pattern

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