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Table 2 Primer sets specific for E-11 serotypes and CV-B serotypes mapped in regions upstream and downstream from recombination breakpoint

From: Detection of recombinant breakpoint in the genome of human enterovirus E11 strain associated with a fatal nosocomial outbreak

Primer name

Sequence

Position (bp)

E11 2F

CCGTTTGTGTCCCTRGATTACTC

1607–1630*

CVB 2F

TTTGCNCCRCTGAGTTATAGCA

1741–1769#

E-11 2R

GAATGCGGAARATGTCCAT

1917–1936*

CVB 2R

ANACYTGGGARCCRTTNGTTGA

1965–1986#

E11 3F

GTYGGNTGAYCCNGATGTG

6593–6613*

CVB 3F

GTYGGNTGYGAYCCNGACCT

6593–6612#

E11 3R

RGTCAARCARCGCCCRACGGGC

7254–7275*

CVB 3R

GGGTCAARCAGCGCCCNACTGG

7028–7049#

  1. *Position for E-11 primers are referred to Human echovirus 11 prototype strain Kust/86 (Accession N GenBank: AY167105.1); #CVB primers position are referred to Coxsackievirus B1 prototype sequence (Accession N GenBank: M16560.1)