Table 2 The variations of HPV-58 E6-E7 gene
| Â | E6 | E7 | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Positions | 1 | 2 | 2 | 2 | 2 | 3 | 3 | 3 | 3 | 4 | 5 | 5 | 6 | 6 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 8 | N |
5 | 1 | 2 | 5 | 6 | 0 | 1 | 4 | 8 | 0 | 9 | 9 | 3 | 9 | 2 | 4 | 5 | 6 | 6 | 6 | 9 | 0 | Â | |
2 | 7 | 9 | 9 | 1 | 7 | 0 | 0 | 8 | 7 | 7 | 9 | 2 | 4 | 6 | 4 | 5 | 0 | 1 | 3 | 3 | 3 | Â | |
Reference | T | T | T | A | G | C | A | A | A | T | A | G | C | G | T | T | C | G | G | A | A | T | Â |
58HB01 | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | G | – | – | – | – | – | C | 31 |
58HB02 | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | – | – | – | – | – | – | 31 |
58HB03 | – | – | – | – | A | – | – | – | C | – | – | – | – | – | – | – | – | – | – | – | – | C | 1 |
58HB04 | – | – | – | – | – | T | – | – | – | – | – | – | – | A | – | G | – | – | A | – | – | – | 43 |
58HB05 | – | – | C | – | – | – | – | – | C | – | – | – | – | – | – | G | – | – | A | – | – | – | 1 |
58HB06 | – | – | – | – | – | T | – | – | – | – | – | – | – | – | – | G | – | A | – | – | – | – | 1 |
58HB07 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | – | G | – | – | – | – | – | C | 2 |
58HB08 | – | – | – | – | – | – | – | G | C | – | – | – | – | – | – | G | – | – | – | – | – | C | 1 |
58HB09 | C | – | – | – | – | T | – | – | – | – | – | – | – | A | – | G | – | – | A | – | – | – | 2 |
58HB10 | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | G | – | – | A | – | – | – | 1 |
58HB11 | – | – | – | – | – | – | – | – | C | G | – | – | – | – | – | G | – | – | A | – | – | – | 1 |
58HB12 | – | – | – | G | – | – | – | – | – | – | – | – | – | – | – | G | – | – | – | – | – | C | 1 |
58HB13 | – | – | – | – | – | – | – | – | C | – | – | A | – | – | – | G | – | – | – | – | – | C | 5 |
58HB14 | – | – | – | – | – | – | – | – | C | – | G | – | – | – | – | – | – | – | – | – | – | – | 1 |
58HB15 | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | – | – | A | – | – | – | 3 |
58HB16 | – | – | – | – | – | T | – | – | – | – | – | – | T | – | – | G | – | A | – | – | – | – | 9 |
58HB17 | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | G | – | – | – | – | G | C | 1 |
58HB18 | – | – | – | – | – | T | – | – | – | – | – | – | – | A | – | G | A | – | A | G | – | – | 2 |
58HB19 | – | – | – | – | – | – | – | – | – | – | – | – | – | – | C | – | – | – | – | – | – | – | 1 |
58HB20 | – | – | – | – | – | – | G | – | C | – | – | – | – | – | – | G | – | – | – | – | – | C | 1 |
58HB21 | – | A | – | – | – | – | – | – | C | – | – | – | – | – | – | G | – | – | – | – | – | C | 2 |
Reference AA | L | T | S | L | R | C | L | R | K | L | L | R | T | G | A | T | T | G | G | T | T | V | Â |
AA Position | 1 | 3 | 4 | 5 | 5 | 6 | 6 | 7 | 9 | 1 | 8 | 9 | 2 | 4 | 5 | 5 | 6 | 6 | 6 | 6 | 7 | 7 | Â |
5 | 6 | 0 | 0 | 1 | 6 | 7 | 7 | 3 | 0 | Â | Â | 0 | 1 | 1 | 7 | 1 | 3 | 3 | 4 | 4 | 7 | Â | |
| Â | Â | Â | Â | Â | Â | Â | Â | Â | 0 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | |
AA Variant | – | – | – | – | K | – | – | – | N | V | – | K | I | R | – | – | N | S | D | A | A | A |  |
Secondary structure | H | Â | H | Â | S | H | H | H | Â | S | H | H | Â | Â | Â | S | Â | Â | Â | Â | Â | H | Â |