Table 1 De novo assembly of PRRSV strains in this study
Strain | Type | Year isolated | Cq value | Total reads | Final contig length (bp) | Depth of coverage ( ×) | ORF5 lineagea |
|---|---|---|---|---|---|---|---|
JA-142 | PRRSV2 | 2003 | 9.93 | 774,372 | 15,386 | 4954 | L8 |
K07-2273 | PRRSV2 | 2007 | 14.16 | 946,690 | 14,904 | 208 | LKC |
K08-1054 | PRRSV2 | 2008 | 10.59 | 862,281 | 15,382 | 3965 | L5 |
CBJE19 | PRRSV2 | 2010 | 14.23 | 548,750 | 14,989 | 1145 | LKA |
GGYC45 | PRRSV2 | 2010 | 16.37 | 551,128 | 14,977 | 1273 | LKB |
D40 | PRRSV1 | 2011 | 15.14 | 775,059 | 14,992 | 779 | sub1A |
CNCY42 | PRRSV2 | 2011 | 11.65 | 917,738 | 15,385 | 4504 | L5 |
GBGJ22 | PRRSV2 | 2011 | 15.26 | 599,160 | 15,003 | 3591 | LKA |
JB15-N-PJ4-GN | PRRSV2 | 2015 | 15.04 | 1,093,345 | 15,384 | 4284 | L5 |
JB15-N-M8-GN | PRRSV2 | 2015 | 8.95 | 708,664 | 14,962 | 5962 | L5 |
JB15-N-PJ10-GN | PRRSV2 | 2015 | 12.81 | 833,933 | 14,989 | 4585 | LKB |
JB15-N-P31-GB | PRRSV2 | 2015 | 14.14 | 964,440 | 14,970 | 4048 | L1 |
JB15-N-PJ45-GN | PRRSV2 | 2015 | 12.22 | 952,476 | 14,983 | 2305 | LKC |
JB15-N-PJ73-GN | PRRSV2 | 2015 | 14.73 | 861,340 | 14,975 | 2928 | L1 |
JB15-E-M17-JB | PRRSV1 | 2015 | 14.04 | 748,606 | 15,111 | 1835 | sub1C |
JB15-E-P47-GB | PRRSV1 | 2015 | 14.24 | 619,588 | 14,965 | 298 | sub1A |
CBNU0495 | PRRSV1 | 2016 | 14.86 | 806,549 | 14,942 | 2046 | sub1A |
JBNU-19-E01 | PRRSV1 | 2019 | 15.41 | 1,301,645 | 14,993 | 3052 | sub1A |
JBNU-19-N01 | PRRSV2 | 2019 | 13.02 | 1,498,543 | 14,952 | 3985 | L1 |
JBNU-20-N01 | PRRSV2 | 2020 | 13.86 | 1,335,257 | 14,988 | 2681 | L1 |