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Fig. 3 | Virology Journal

Fig. 3

From: Whole-genome sequencing and genetic characteristics of representative porcine reproductive and respiratory syndrome virus (PRRSV) isolates in Korea

Fig. 3

Schematic diagram of multiple alignments of NSP2 amino acid sequences relative to a the Lelystad virus (PRRSV1) and b VR-2332 (PRRSV2). The illustration on the top represents the organization of the PRRSV NSP2 protein, featuring a putative cysteine domain (PL2) between two hypervariable (HV) regions. The trees on the left were generated and color-coded based on NSP2 nucleotide sequences, as indicated in Fig. 2. Multiple sequence alignments (MSAs) were generated by using the NCBI MSA tool version 1.18, with coloration based on the BLOSUM62 matrix. Detailed MSAs of the PRRSV1 and PRRSV2 isolates are illustrated in Additional files 7 and 8, respectively

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Virology Journal

ISSN: 1743-422X