Fig. 3
Phylogenetic analysis of all available APPV strains. Phylogenetic analysis based on encoding sequences of the whole genome (A), E2 (B), Erns (C), Npro (D), NS3 (E), and NS5B genes (F) were conducted in MEGA11 using the Maximum likelihood method and GTR + G + I (for full-length CDS, Npro, NS3, and NS5B) or TN93 + G + I (for E2 and Erns) substitution model. Bootstrap values were calculated for 1000 replicates, only values > 50% are indicated. A rat pestivirus isolate (NC_025677) from USA was used as an outgroup. ▲ indicates the sequence from the virus described in this study (color figure online)