| Baseline sequencing | Follow-up sequencing | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Sample ID | Sex | Age (years) | HIV Stage | HIV VL | Total reads | HIV reads | Sequencing depth (x) | FU interval (weeks) | Total reads | HIV reads | Sequencing depth (x) |
261 | M | 33 | E | 8.4 × \({10}^{7}\) | 415,560 | 198,157 | 17,408 | No FU |  |  |  |
2504 | F | 24 | E | 3.7 × \({10}^{4}\) | 396,640 | 288,841 | 25,452 | 2 | 483,620 | 308,253 | 27,268 |
3469 | F | 20 | E | 3.3 × \({10}^{4}\) | 79,948 | 38,927 | 3139 | 9 | 181,956 | 104,874 | 9169 |
5041 | M | 23 | E | 2.2 × \({10}^{7}\) | 146,352 | 108,572 | 10,023 | No FU |  |  |  |
6512 | F | 23 | E | 1.7 × \({10}^{3}\) | 155,222 | 114,138 | 10,269 | 2 | 246,184 | 181,098 | 16,380 |
6727 | F | 28 | E | 4.8 × \({10}^{3}\) | 91,218 | 60,365 | 5230 | 2 | 202,824 | 127,955 | 11,522 |
6638 | F | 28 | E | 1.9 × \({10}^{5}\) | 167,878 | 108,348 | 9913 | 6 | 309,802 | 222,628 | 20,221 |
6582 | F | 24 | E | 6.2 × \({10}^{3}\) | 311,276 | 201,897 | 17,355 | 6 | 857,888 | 602,248 | 49,753 |
9498 | F | 34 | E | 5.0 × \({10}^{5}\) | 145,514 | 100,637 | 8871 | No FU |  |  |  |
9049 | F | 20 | E | 1.6 × \({10}^{4}\) | 363,168 | 226,752 | 19,829 | 3 | 1,724,070 | 1,406,644 | 65,497 |
8575 | F | 27 | E | 9.3 × \({10}^{4}\) | 355,040 | 238,087 | 21,126 | 8 |  |  |  |
8047 | M | 31 | E | 1.2 × \({10}^{6}\) | 386,426 | 308,249 | 28,180 | 2 | 559,602 | 452,725 | 41,274 |
7084 | F | 28 | E | 3.3 × \({10}^{8}\) | 199,022 | 113,257 | 9843 | 4 | 100,980 | 81,776 | 7168 |
6743 | F | 26 | E | 2.7 × \({10}^{4}\) | 87,982 | 43,575 | 3928 | 7 | 223,468 | 149,257 | 78,503 |
6737 | F | 24 | E | 2.2 × \({10}^{3}\) | 270,528 | 192,684 | 16,793 | No FU |  |  |  |
639 | F | 30 | C | 6.5 × \({10}^{3}\) | 851,104 | 651,917 | 60,785 | 7 | 408,144 | 293,996 | 25,994 |
641 | F | 30 | C | 7.0 × \({10}^{4}\) | 1,334,058 | 969,199 | 45,128 | 4 | 153,448 | 113,391 | 10,062 |
843 | F | 21 | C | 2.9 × \({10}^{4}\) | 328,480 | 278,706 | 16,615 | 5 | 1,458,950 | 1,250,697 | 58,236 |
921 | F | 44 | C | 9.7 × \({10}^{3}\) | 919,452 | 599,019 | 49,637 | No FU |  |  |  |
1121 | F | 27 | C | 8.0 × \({10}^{4}\) | 126,868 | 90,889 | 8203 | 2 | 394,752 | 283,697 | 25,273 |
1213 | F | 36 | C | 3.2 × \({10}^{4}\) | 279,080 | 228,046 | 14,505 | No FU |  |  |  |
1475 | F | 32 | C | 4.4 × \({10}^{4}\) | 1,165,614 | 772,938 | 35,990 | 9 | 276,200 | 186,658 | 16,450 |
2340 | F | 22 | C | 1.4 × \({10}^{4}\) | 3,144,374 | 2,260,428 | 119,694 | No FU |  |  |  |
2678 | F | 30 | C | 2.2 × \({10}^{5}\) | 406,036 | 291,734 | 16,510 | 4 | 1,300,644 | 1,060,811 | 49,394 |
2696 | F | 18 | C | 3.9 × \({10}^{2}\) | 2,426,068 | 1,624,274 | 137,760 | No FU |  |  |  |
3253 | F | 28 | C | 8.9 × \({10}^{4}\) | 1,342,710 | 893,218 | 41,590 | 3 | 2,060,282 | 1,337,210 | 115,839 |
3387 | F | 37 | C | 7.9 × \({10}^{4}\) | 1,769,858 | 1,107,226 | 95,026 | No FU |  |  |  |
3474 | F | 21 | C | 1.6 × \({10}^{4}\) | 241,256 | 164,637 | 14,848 | 12 | 289,220 | 194,533 | 17,234 |
9986 | F | 28 | C | 9.7 × \({10}^{4}\) | 187,066 | 116,633 | 9830 | 2 | 90,100 | 57,543 | 4772 |
3606 | F | 24 | C | 1.5 × \({10}^{4}\) | 558,718 | 186,290 | 19,453 | No FU |  |  |  |
3869 | F | 32 | C | 2.1 × \({10}^{5}\) | 1,413,006 | 905,554 | 42,165 | 4 | 1,678,940 | 1,181,291 | 98,302 |
3880 | F | 30 | C | 7.5 × \({10}^{3}\) | 1,569,698 | 1,138,834 | 101,974 | 3 | 2,339,288 | 1,600,920 | 132,141 |
3910 | F | 33 | C | 2.8 × \({10}^{4}\) | 929,580 | 715,365 | 33,309 | 3 | 2,858,950 | 1,977,216 | 157,648 |
3912 | F | 27 | C | 3.2 × \({10}^{4}\) | 167,708 | 120,889 | 10,826 | 8 | 364,208 | 270,552 | 23,731 |
3920 | F | 20 | C | 6.6 × \({10}^{4}\) | 558,718 | 186,290 | 16,933 | 8 | 741,498 | 533,342 | 44,809 |
3935 | F | 33 | C | 2.4 × \({10}^{5}\) | 1,733,492 | 1,367,261 | 63,663 | 8 | 3,256,998 | 1,870,279 | 130,685 |
4351 | F | 35 | C | 2.6 × \({10}^{3}\) | 1,091,330 | 855,414 | 39,830 | 3 | 114,350 | 71,708 | 5819 |
4198 | F | 19 | C | 1.7 × \({10}^{3}\) | 1,523,160 | 925,214 | 77,596 | No FU |  |  |  |
5054 | F | 26 | C | 2.7 × \({10}^{4}\) | 392,770 | 294,322 | 26,607 | 2 | 323,594 | 241,595 | 21,969 |
6380 | F | 25 | C | 1.1 × \({10}^{4}\) | 354,870 | 254,132 | 23,050 | 4 | 229,160 | 156,127 | 13,011 |
6565 | F | 28 | C | 5.6 × \({10}^{3}\) | 1,827,778 | 1,280,993 | 76,473 | 3 | 121,716 | 95,006 | 8145 |
6671 | F | 35 | C | 1.4 × \({10}^{4}\) | 935,030 | 676,975 | 40,433 | No FU |  |  |  |
6649 | F | 32 | C | 2.1 × \({10}^{4}\)  | 1,163,568 | 755,545 | 65,939 | 2 | 1,482,096 | 998,909 | 83,275 |
6640 | F | 37 | C | 3.0 × \({10}^{3}\) | 376,388 | 248,289 | 21,017 | 5 | 1,471,394 | 1,041,570 | 93,224 |
6596 | F | 31 | C | 3.8 × \({10}^{3}\) | 1,318,526 | 1,082,538 | 50,406 | 8 | 1,346,566 | 910,739 | 78,503 |
6509 | M | 36 | C | 1.0 × \({10}^{5}\) | 655,472 | 520,480 | 23,577 | No FU |  |  |  |
9915 | F | 30 | C | 1.4 × \({10}^{4}\) | 489,752 | 372,610 | 21,830 | No FU |  |  |  |
9895 | F | 31 | C | 4.8 × \({10}^{3}\) | 458,108 | 328,446 | 18,433 | No FU |  |  |  |
9854 | F | 20 | C | 1.2 × \({10}^{4}\) | 393,220 | 336,159 | 20,018 | No FU |  |  |  |
8828 | F | 27 | C | 4.1 × \({10}^{4}\) | 1,331,066 | 985,767 | 45,900 | 14 | 94,018 | 59,609 | 5106 |
7959 | F | 40 | C | 1.4 × \({10}^{5}\) | 538,128 | 453,795 | 23,053 | No FU |  |  |  |
6990 | F | 26 | C | 1.7 × \({10}^{4}\) | 143,560 | 101,490 | 9056 | 6 | 179,342 | 136,949 | 12,630 |