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Table 5 Nucleotide sequence mutations of HPV16 E6-E7 genes

From: Prevalence and distribution of human papillomavirus (HPV) in Luoyang city of Henan province during 2015–2021 and the genetic variability of HPV16 and 52

 

Domain: HPV16 E6 sequence

  

Domain: HPV16 E7 sequence

 

nt

7

7

7

7

7

7

7

7

7

n

nt

7

7

7

7

7

7

7

7

n

1

1

2

2

2

2

2

3

5

6

6

7

7

8

8

8

8

3

3

1

1

2

3

6

9

4

8

8

0

9

0

3

8

8

6

7

0

8

0

0

1

2

9

8

9

8

1

2

2

5

8

NC001526

G

A

C

G

T

G

G

T

G

 

NC001526

A

A

G

C

T

C

T

T

 

MZ546266

    

G

    

1

MZ546295

 

G

 

T

  

C

C

1

MZ546267

A

       

A

2

MZ546296

  

A

T

    

2

MZ546268

    

G

    

2

MZ546297

 

G

 

T

   

C

2

MZ546269

         

2

MZ546298

     

T

  

2

MZ546270

       

G

 

1

MZ546299

   

T

    

1

MZ546271

         

2

MZ546300

  

A

T

    

2

MZ546272

         

1

MZ546301

   

T

C

   

1

MZ546273

A

   

A

    

1

MZ546302

  

A

     

1

MZ546274

A

G

  

A

    

1

MZ546303

  

A

     

1

MZ546275

   

A

     

1

MZ546304

    

C

   

1

MZ546276

  

G

   

A

G

 

1

MZ546305

C

       

1

MZ546277

   

T

     

1

MZ546306

    

C

   

1

MZ546278

     

C

   

2

MZ546307

        

2

Reference aa

K

R

T

D

D

E

R

L

R

  

N

N

E

S

L

R

C

S

 

aa position

        

1

           
  

2

3

3

3

4

9

4

  

2

2

3

6

6

7

9

9

 

4

5

9

2

2

6

6

0

2

  

9

9

5

3

7

7

4

5

 

aa mutations

 

G

S

N/Y

E

Q

Q

V

Q

  

H

S

 

F

 

C

   

Frequency

4

1

1

2

5

2

1

2

2

18

 

1

3

6

9

3

2

1

3

18

  1. Positions without variants are marked with a dash, whereas positions with variants are indicated by a letter