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Table 4 Nucleotide sequence mutations of HPV52 L1 genes

From: Prevalence and distribution of human papillomavirus (HPV) in Luoyang city of Henan province during 2015–2021 and the genetic variability of HPV16 and 52

 

Domain: HPV52 L1 sequence

  

nt

5

5

5

5

5

5

6

6

6

6

6

6

6

6

6

6

6

7

7

n

Sublineage

5

7

7

8

9

9

0

1

2

4

6

7

7

7

8

9

9

0

1

7

7

7

2

0

7

8

1

1

4

9

0

6

9

2

1

3

5

1

8

1

7

8

9

2

3

0

8

3

8

1

4

4

4

7

2

2

2

NC_001592

T

A

A

A

A

T

G

G

G

C

G

T

T

A

C

C

A

G

G

 

Protype

OL589507

     

C

 

A

A

  

G

C

G

T

A

 

A

 

1

B2

OL589508

 

G

   

C

 

A

A

  

G

C

G

T

A

 

A

 

11

B2

OL589509

C

   

G

 

A

 

A

T

A

    

A

C

 

A

1

C2

OL589510

 

G

G

  

C

 

A

A

  

G

C

G

T

A

 

A

 

1

B2

OL589511

 

G

 

G

 

C

 

A

A

  

G

C

G

T

A

 

A

 

1

B2

reference aa

L

T

V

K

P

I

R

Q

Q

A

E

V

F

K

Y

V

I

R

S

  
     

1

1

1

1

2

2

3

3

4

4

4

4

4

4

5

  
  

6

7

8

1

3

7

8

1

9

7

7

0

1

2

5

5

9

1

  

aa position

5

9

1

8

5

6

3

2

8

3

8

9

0

0

0

1

6

6

6

  

aa mutations

S

                    

Frequency

1

13

1

1

1

14

1

14

15

1

1

14

14

14

14

15

1

14

1

15

 
  1. Positions without variants are marked with a dash, whereas positions with variants are indicated by a letter