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Table 3 Nucleotide sequence mutations of HPV16 L1 genes

From: Prevalence and distribution of human papillomavirus (HPV) in Luoyang city of Henan province during 2015–2021 and the genetic variability of HPV16 and 52

 

Domain: HPV16 L1 sequence

  

nt

4

5

5

5

5

5

5

5

5

5

5

6

n

Sublineage

9

0

3

4

5

5

6

7

8

9

9

1

3

0

1

9

2

7

8

9

0

6

7

9

3

2

6

4

8

0

3

4

3

2

4

6

NC_001526

A

T

A

A

A

A

T

A

A

C

G

G

 

Protype

MZ546238

     

G

C

 

C

  

A

5

A1

MZ546239

     

G

  

C

   

7

A1

MZ546240

G

    

G

C

 

C

  

A

1

A1

MZ546241

    

C

G

      

1

A1

MZ546242

     

G

C

 

C

  

A

1

A1

MZ546243

 

G

C

  

G

C

 

C

  

A

1

A1

MZ546244

     

G

   

T

 

A

1

A3

MZ546245

  

C

  

G

   

T

 

A

1

A3

MZ546246

     

G

 

T

C

  

A

2

A1

MZ546247

     

G

 

T

C

 

A

A

1

A1

MZ546248

   

C

 

G

     

A

1

A4

MZ546249

  

C

  

G

     

A

5

A4

reference aa

K

H

N

E

R

T

D

T

S

S

E

L

  

aa position

  

1

2

2

2

3

3

3

3

4

4

  

5

7

8

4

5

6

0

4

4

9

0

7

  

3

6

1

0

2

6

3

0

3

6

0

4

  

aa mutations

 

Q

T

D

 

A

        

Frequency

1

1

7

1

1

27

8

3

18

2

1

19

27

 
  1. Positions without variants are marked with a dash, whereas positions with variants are indicated by a letter