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Table 1 Proviral HIV integration sites in the PBMC of the kidney (A) and liver (B) recipients during the post-transplant period

From: Analysis of HIV quasispecies and virological outcome of an HIV D+/R+ kidney–liver transplantation

Integration site (chromosome; position) % of matches   
  09/13/2019 02/07/2020 01/22/2021
A    
NC_000015.10; 77401646 39.74 0 0
NC_000010.11; 21714841 29.23 0 0
NC_000005.10; 139967566 18.24 54.04 57.10
NC_000001.11; 226567704 3.04 0.11 0.20
NC_000002.12; 16097405 1.51 3.34 3.61
NC_000013.11; 59598085 1.28 0 9.37
NC_000011.10; 133588835 1.23 0 0
NC_000020.11; 56101682 0.37 0 0
NC_000013.11; 28414033 0.26 0 0
NC_000014.9; 52551000 0.24 0.54 0.41
NC_000020.11; 49687838 0.24 0.81 1.09
NC_000022.11; 46086683 0.15 0 0
NC_000004.12; 35007318 0.13 0 0
NC_000009.12; 122992409 0.05 0.54 0.08
NC_000009.12; 74259647 0 28.09 0
NC_000018.10; 36235516 0 1.35 0
NC_000004.12; 35007318 0 0.97 0.73
NC_000011.10; 58541534 0 0.81 0
NC_000007.14; 45947801 0 0.70 0
NC_000016.10; 5408445 0 0.48 0
NC_000016.10; 72345482 0 0.43 0
NC_000003.12; 163832295 0 0 9.61
NC_000001.11; 26998745 0 0 1.42
NC_000022.11; 46086683 0 0 0.93
NC_000017.11; 17716854 0 0 0.53
NC_000001.11; 196452109 0 0 0.45
NC_000016.10; 5408445 0 0 0.41
NC_000005.10; 140366572 0 0 0.41
NC_000001.11; 240464202 0 0 0.32
Integration site (chromosome; position) % of matches   
  09/23/2019 02/15/2020  
B    
NC_000005.10; 139967566 87.96 87.64  
NC_000002.12; 16097405 4.31 4.53  
NC_000020.11; 49687838 1.62 1.65  
NC_000014.9; 52551000 1.26 0.82  
NC_000004.12; 35007318 1.17 1.03  
  1. The integration sites are reported as human chromosome position; the frequencies for each integration site and for each time point evaluated were calculated as number of reads matched on that site, divided the number of total reads containing a LTR sequence obtained from that sample (% of matches). Only frequencies deriving from at least 8 matches were considered