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Table 4 The down-regulated pathways focused in the discussion section

From: Transcriptional responses of Daphnis nerii larval midgut to oral infection by Daphnis nerii cypovirus-23

id

Term

pValue

Enrichment_score

gene_id

BaseMean_control_mock

BaseMean_case_DnCPV

FoldChange

pValue

qValue

Regulation

NR annotation

KEGG gene name

ko04974

Protein digestion and absorption

1.33E−17

6.845688889

TRINITY_DN12884_c1_g5_i1_1

2843.901036

282.1111777

0.099198662

1.72 E−06

0.0007668

Down

LOW QUALITY PROTEIN: carboxypeptidase B [Bombyx mori]

CPA2

    

TRINITY_DN13745_c3_g2_i2_4

37,228.13358

6283.238748

0.168776625

0.04653249

0.7667028

Down

putative chymotrypsin, partial [Samia ricini]

CELA2

    

TRINITY_DN13546_c1_g2_i2_1

33,763.67895

179.8629852

0.005327115

1.26 E−10

2.06 E−07

Down

RecName: Full = Trypsin, alkaline C; Flags: Precursor

PRSS1_2_3

    

TRINITY_DN11633_c0_g1_i2_3

576.0371804

28.38155477

0.049270352

1.62 E−08

1.12 E−05

Down

trypsin, alkaline C-like [Spodoptera litura]

PRSS1_2_3

    

TRINITY_DN13619_c0_g2_i1_3

701.0350489

199.5322761

0.28462525

0.00871419

0.3479086

Down

sodium/potassium-transporting ATPase subunit alpha isoform X6 [Bombyx mori]

ATP1A

    

TRINITY_DN13597_c0_g2_i2_4

683.1424229

36.96948382

0.054116803

0.03730582

0.7023823

Down

serine protease 62 [Mamestra configurata]

PRSS1_2_3

    

TRINITY_DN10836_c0_g7_i1_6

407.2114124

52.04490715

0.127808076

0.00142694

0.1232753

Down

trypsin, partial [Manduca sexta]

PRSS1_2_3

    

TRINITY_DN7116_c0_g1_i1_5

140.0397486

41.73985284

0.298057182

0.02906

0.6296715

Down

Prolylcarboxypeptidase [Danaus plexippus plexippus]

PRCP

    

TRINITY_DN5681_c0_g1_i1_6

1202.562374

41.63057875

0.034618228

0.00013096

0.0240473

Down

chymotrypsinogen-like protein 3 [Manduca sexta]

PRSS1_2_3

    

TRINITY_DN10836_c0_g5_i1_6

3539.814633

11.52410727

0.003255568

0.00393418

0.2234223

Down

trypsin, alkaline C [Bombyx mori]

PRSS1_2_3

    

TRINITY_DN14237_c1_g1_i3_3

2139.270665

126.8457966

0.059293945

0.00362815

0.2142243

Down

hypothetical protein B5V51_4161 [Heliothis virescens]

PRSS1_2_3

    

TRINITY_DN18044_c0_g1_i1_4

61.20950346

0

0

0.00262208

0.1786659

Down

RecName: Full = Trypsin, alkaline C; Flags: Precursor

PRSS1_2_3

    

TRINITY_DN13619_c0_g3_i1_3

1098.504638

384.681457

0.350186466

0.02344348

0.5771173

Down

Sodium/potassium-transporting ATPase subunit alpha [Papilio xuthus]

ATP1A

    

TRINITY_DN12770_c1_g2_i2_6

33,988.65545

2472.057397

0.072731838

0.03984473

0.7217322

Down

serine protease 62 [Mamestra configurata]

PRSS1_2_3

    

TRINITY_DN14161_c2_g2_i3_3

150,880.9838

10,699.40148

0.070912856

0.027439

0.6151748

Down

trypsin, alkaline C-like [Spodoptera litura]

PRSS1_2_3

    

TRINITY_DN12929_c2_g1_i1_6

9158.048497

41.0899202

0.004486755

0.00143302

0.1232753

Down

trypsin [Manduca sexta]

PRSS1_2_3

    

TRINITY_DN10836_c0_g1_i4_6

157,887.1736

53,448.64932

0.338524328

0.02226533

0.5641697

Down

trypsin, alkaline C-like [Bombyx mori]

PRSS1_2_3

    

TRINITY_DN12646_c0_g1_i3_6

18,799.76899

343.0033323

0.018245082

0.00558226

0.271197

Down

trypsin, alkaline C-like [Spodoptera litura]

PRSS1_2_3

    

TRINITY_DN3826_c0_g1_i1_3

4708.243184

116.815754

0.024810901

0.00083317

0.0853474

Down

serine protease 5 [Mamestra configurata]

PRSS1_2_3

    

TRINITY_DN12903_c0_g1_i1_6

588.272948

19.69837276

0.03348509

7.39 E−10

8.85 E−07

Down

silk gland derived serine protease [Bombyx mori]

PRSS1_2_3

    

TRINITY_DN14269_c4_g1_i5_4

15,015.14212

207.7199418

0.013834031

0.00010037

0.019782

Down

trypsin [Manduca sexta]

PRSS1_2_3

    

TRINITY_DN8384_c0_g2_i8_4

4501.305649

35.57861617

0.007904066

0.00033725

0.0475214

Down

chymotrypsinogen-like protein 3 [Manduca sexta]

PRSS1_2_3

    

TRINITY_DN17232_c0_g1_i1_5

229.0935699

80.06529495

0.349487308

0.03584292

0.6919927

Down

proton-coupled amino acid transporter-like protein CG1139 [Trichoplusia ni]

SLC36A, PAT

    

TRINITY_DN8969_c0_g1_i1_6

1070.195299

24.35172941

0.022754472

0.00153816

0.1284174

Down

carboxypeptidase B [Bombyx mori]

CPA2

    

TRINITY_DN12498_c2_g2_i1_5

3577.880426

0

0

0.00308839

0.197654

Down

trypsin CFT-1-like [Trichoplusia ni]

PRSS1_2_3

    

TRINITY_DN9363_c0_g1_i1_5

2166.100895

67.76280065

0.031283308

7.81 E−11

1.52 E−07

Down

trypsin precursor AiD2, partial [Agrotis ipsilon]

PRSS1_2_3

    

TRINITY_DN7771_c0_g1_i1_1

166.8439433

24.32627007

0.145802536

0.01850363

0.5173478

Down

hypothetical protein B5V51_4161 [Heliothis virescens]

PRSS1_2_3

    

TRINITY_DN1220_c0_g1_i1_5

14,636.6041

1623.956772

0.110951745

6.30 E−06

0.0020452

Down

trypsin, alkaline C-like [Spodoptera litura]

PRSS1_2_3

ko04977

Vitamin digestion and absorption

8.59 E−05

4.753950617

TRINITY_DN8071_c0_g1_i2_5

159.1367963

7.893169411

0.049599901

2.35 E−05

0.0062453

Down

proton-coupled folate transporter isoform X2 [Bombyx mori]

SLC46A1

    

TRINITY_DN12381_c0_g2_i1_6

15,115.15447

69.82405532

0.004619473

1.51 E−05

0.0042801

Down

pancreatic triacylglycerol lipas E−like [Spodoptera litura]

PNLIP, PL

    

TRINITY_DN9781_c0_g1_i1_3

75.2460337

20.63729453

0.274264217

0.03100164

0.6531949

Down

scavenger receptor class B type 1 like protein 12 [Bombyx mori]

SCARB1

    

TRINITY_DN11521_c0_g1_i2_4

1196.401288

280.0407483

0.234069247

0.00250876

0.1751687

Down

solute carrier family 52, riboflavin transporter, member 3-B isoform X3 [Trichoplusia ni]

SLC52A3, RFT2

    

TRINITY_DN14080_c0_g1_i4_5

13,236.92182

908.4409062

0.068629317

0.03090689

0.6516395

Down

pancreatic triacylglycerol lipase [Bombyx mori]

PNLIP, PL

    

TRINITY_DN17108_c0_g1_i1_5

19.89691746

1.317177118

0.066200059

0.0121168

0.4110339

Down

hypothetical protein B5V51_177 [Heliothis virescens]

SLC46A1

    

TRINITY_DN14140_c0_g1_i1_6

6399.436654

1095.005085

0.171109606

0.00016917

0.0286312

Down

sensory neuron membrane protein 2 [Bombyx mori]

SCARB1

ko04624

Toll and Imd signaling pathway

0.00016

3.943369176

TRINITY_DN13195_c0_g1_i3_3

48,818.06612

740.1059156

0.015160492

2.79 E−06

0.0010722

Down

peptidoglycan recognition protein 2 [Manduca sexta]

PGRP

    

TRINITY_DN1052_c0_g1_i2_5

74.58752535

0

0

0.02832612

0.6208957

Down

Bacteriophage T7 lysozym E−like protein 1 (BTL-LP1) [Bombyx mori]

PGRP

    

TRINITY_DN10280_c0_g1_i1_3

1415.480197

536.8363029

0.379260907

0.04150037

0.7315422

Down

caspas E−6 [Manduca sexta]

CASP8

    

TRINITY_DN14006_c2_g1_i2_4

16,714.28346

318.7737419

0.019071936

3.82 E−10

5.17 E−07

Down

peptidoglycan recognition protein 2 [Manduca sexta]

PGRP

ko00830

Retinol metabolism

0.000409

3.492698413

TRINITY_DN14190_c1_g2_i2_4

4018.349256

720.63212

0.179335362

0.04158394

0.7316189

Down

UDP-glucosyltransferase isoform X1 [Bombyx mori]

UGT

    

TRINITY_DN12319_c0_g2_i1_4

4465.699274

170.972127

0.038285634

2.79 E−06

0.0010722

Down

UDP-glycosyltransferase UGT340C2 [Bombyx mori]

UGT

    

TRINITY_DN12896_c1_g2_i3_3

4251.17249

1508.008769

0.35472773

0.02274633

0.5685456

Down

PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like [Papilio machaon]

DHRS4

    

TRINITY_DN13518_c1_g1_i6_6

745.6825793

119.2237632

0.159885408

0.0001628

0.0278557

Down

UDP-glycosyltransferase UGT340C1 precursor [Bombyx mori]

UGT

    

TRINITY_DN14445_c0_g1_i1_3

151.0781746

54.27468401

0.359249006

0.04671659

0.7685163

Down

hypothetical protein B5X24_HaOG201493 [Helicoverpa armigera]

RDH12

    

TRINITY_DN9738_c0_g1_i1_6

438.41149

83.17535239

0.189719828

0.04256225

0.7412925

Down

uncharacterized protein LOC112052352 [Bicyclus anynana]

UGT

    

TRINITY_DN8673_c0_g1_i3_3

839.7824168

167.2848772

0.199200262

0.00073535

0.0803495

Down

PREDICTED: UDP-glucuronosyltransferase 2B19-like isoform X6 [Amyelois transitella]

UGT

    

TRINITY_DN17220_c0_g1_i1_4

6379.593263

3.929259199

0.000615911

0.00570705

0.2744919

Down

UDP-glycosyltransferase UGT340C1 precursor [Bombyx mori]

UGT