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Table 3 Subsequent PCR protocols and primers used

From: The first reported cases of elephant endotheliotropic herpesvirus infectious haemorrhagic disease in Malaysia: case report

Genes/loci

Primer sequences (5′-3′)

Product length (bp)

Accession number

U60(TERex3)

LGH6640: AAATGTTCTATTCCGTATAC

LGH6672: CATGTTGTGCAGGCACTCTTC

LGH6671: GTTTGTAGTAAATGCCGGATC

LGH6672: CATGTTGTGCAGGCACTCTTC

Round 1:

6640/6672: 850

Round 2:

6671/6672: 780

JX011056-62

U71(gM)

LGH6749: CTATGGGATCCGAACTTTC

LGH6752: CTACATGCCCATGCAGATAGG

LGH6750: CTTTCTAAGGGGGTTTGTTGC

LGH6752: CTACATGCCCATGCAGATAGG

Round 1:

6749/6752: 730

Round 2:

6750/6752: 710

JX011063-71

U77(HEL)

LGH6743: GCAAGGTRGAACGTATCGTCG

LGH6742: CACAGMGCGTTGTAGAACC

LGH6743: GCAAGGTRGAACGTATCGTCG

LGH6742: CACAGMGCGTTGTAGAACC

Round 1:

6732/6742: 680

Round 2:

6743/6742: 680

JX011072-79

U48.5(TK)

LGH6764: GCACGRTACCACGTACTC

LGH7968: GCGGCAACGAAGTTCACAGGCATYATGG

LGH7968: GCGGCAACGAAGTTCACAGGCATYATGG

LGH7970: TGCMGCYTGAAGGCTGTTTATATACT

Round 1:

6764/7968: 750

Round 2:

7968/7970: 640

MN864103.1

U48(gH-TK)

LGH7981: CTRCATTKMCCAAAGTATGGAAGTA

LGH7985: GGTAGGTTCACCTACATGGAACTTC

LGH7982: CRTYTATATCATCAAARACYTCACA

LGH7985: GGTAGGTTCACCTACATGGAACTTC

Round 1:

7981/7985: 1080

Round 2:

7982/7985: 1040

JX011039-46

U51 (vGPCR1)

LGH7506: GATTGTGAACGCTGTATGCT

LGH4963B: GACTTTCTTCGTAGCCCTCGTCTT

LGH7506: GATTGTGAACGCTGTATGCT

LGH5200A: CGTGATACGCTTCAAAACATACA

Round 1:

7506/4963B: 910

Round 2:

7506/5200A: 750

JX011047-55

E54(vOX2-1)

LGH8471: ATGCTTCAGAGAAAGTACAGGTAC

LGH8472: GTGTTGCCGCCACGATGCTTCTACG

LGH8471: ATGCTTCAGAGAAAGTACAGGTAC

LGH8506: CTA CGC CAC TTG TAA CAG AAT ATC ACG

Round 1:

8471/8472: 910

Round 2:

8471/8506: 890

MF464882-899