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Fig. 3 | Virology Journal

Fig. 3

From: Re-emergence of Gamma-like-II and emergence of Gamma-S:E661D SARS-CoV-2 lineages in the south of Brazil after the 2021 outbreak

Fig. 3

Phylogenetic tree of the VOC Gamma strain isolated in the State of Paraná from 2020-03-05 to 2021-04-28. High-quality genomic sequences (n < 5%) were aligned using Mafft software in the default configuration. The phylogenetic tree was built using the maximum likelihood method in IQTree software and visualized in IToL. Phylogenetic tree highlighting the Gamma variant containing the sequences of Amazonas, Santa Catarina and Rio Grande do Sul and closely related sequences, including those of the subclad Gamma-like-II. The aLRT support values are indicated in key branches, and the scale of the phylogenetic branches is given as substitutions per nucleotide site. Each symbol represents a SARS-CoV-2 lineage, as shown in the legend. The lineage N.10 is highlighted in red; the Gamma-like-II genomes are highlighted in light green; Gamma sequences harboring S:E661D are highlighted in shadow golden and Wuhan-Hu-1 is highlighted in orange

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