Fig. 1

Genome alignment of sequenced APSE haplotypes. The upper part of the figure schematically shows the genome for each haplotype with total size in base pairs (bp) indicated to the left, the boundaries for each module indicated at the top and the boundary for the two predicted functional units indicated at the bottom. Arrows identify predicted genes and their orientation on the positive (right) or negative strand (left) and color (yellow, blue, red, lavender) indicating module assignment. Predicted functions for each gene are summarized in Table 2. The lower part of the figure illustrates the boundaries for the attL and attR sites for each haplotype. The purple bars indicate the left and right boundaries for the H. defensa tRNA-Arg gene, the black bars correspond to the position of the anticodon in the tRNA-loop, the light blue bars correspond to the H. defensa chromosome as identified by alignment to the H. defensa A2C strain, and the dark blue bars correspond to the left and right boundaries for the integrated APSE genome