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Table 2 Conservation of LAMP primer binding sites in genomes of SARS-CoV2

From: Optimization and validation of RT-LAMP assay for diagnosis of SARS-CoV2 including the globally dominant Delta variant

Locus (primer set)

Length

Completed genomes worldwide (5642 sequences)

Completed Genomes from India (284 sequences)

Number of variant nucleotides

Minimum conservation in variant nucleotides (%)

Number of variant nucleotides

Minimum conservation in variant nucleotides (%)

L1

225

54

99.5

5

99.6

RdRp

229

24

64.2

4

87.4

E1

207

8

99.8

1

99.7

E2

211

7

99.9

1

99.7

N2

216

6

99.3

4

99.6

L2

215

14

99.1

8

99.3

N1

213

41

91

11

64