Table 3 Calculated amplicon Tm values of representative non-Japanese isolates
Virus | Isolate | Accessionsa | Strain/lineageb | Calculated Tm (°C) |
|---|---|---|---|---|
PLRV | PLRV165 | MG356502 | – | 87.0 |
PLRV-IM | KC456052 | – | 87.0 | |
14.2 | AF453394 | – | 87.5 | |
D00530 | D00530 | – | 87.5 | |
GAF318-4.2 | KU586454 | – | 87.5 | |
Polish isolate | X74789 | – | 87.5 | |
PVS | Leona | AJ863509 | PVSO | 81.0 |
Dic2 | KR152654 | PVSP | 81.0 | |
BB-AND | JQ647830 | PVSA | 81.5 | |
RL5 | JX683388 | PVSA | 81.5 | |
Id4106-US | FJ813513 | PVSO | 82.0 | |
RVC Andean | JX419379 | PVSP | 82.0 | |
Yunnan YN | KC430335 | PVSO | 82.5 | |
PVX | X3 | D00344 | 84.5 | |
Taiwan | AF272736 | – | 84.5 | |
PVX_Tn148 | MF682528 | – | 84.5 | |
FX21 | EF423572 | – | 85.0 | |
Iran | FJ461343 | – | 85.0 | |
JAL-2 | KR605396 | – | 85.5 | |
PVY | NC57 | DQ309028 | PVYC | 77.5 |
Adgen | AJ890348 | PVYC | 78.0 | |
P141 | MT264735 | PVYNA-N | 78.0 | |
RRA-1 | AY884984 | PVYNA-N | 78.0 | |
PVY-MON | JF928458 | PVYE | 78.5 | |
PVY-AGA | JF928459 | PVYE | 79.0 | |
CO11 | KY847937 | PVYO5 | 79.0 | |
MT100010 | KY847987 | PVYO5 | 79.0 | |
MSU_45_384a | KY847984 | PVYEu-N | 79.0 | |
MT100017 | KY847988 | PVYEu-N | 79.0 | |
ME_236_120 | KY847962 | PVYO | 79.0 | |
CA14 | KY847936 | PVYO | 79.5 |