Table 1 The results of recombination analysis inferred using RDP4 packages
Recombinant | Breakpoint positionψ | Regionδ | Major parent | Minor parent | Methods* | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Beginning breakpoint | Ending breakpoint | RDP | Geneconv | BootScan | MaxChi | Chimaera | SiScan | 3Seq | ||||
TL12C-NM-CHN-2016-E-30-genome | 3126(3070) | 6627(6571) | P2, P3 | KY888272.1_Echovirus_E-30_13-311 | MN337405.1_Echovirus_E18_LJ/0601/2019 | 5.28 × 10–119 | 1.8 × 10–112 | 9.78 × 10–100 | 7.57 × 10–27 | 2.3 × 10–9 | 4.04 × 10–87 | 6.49 × 10–13 |
|  | 4728(4672) | 4920(4864) | P3 | KU574629.1_Echovirus_E9_E-9/PMKA1322/THA/2011 | JX308222.1_Human_coxsackievirus_B4_CVB4/GX/10 | 2.34 × 10–9 | 1.17 × 10–4 | 2.11 × 10–8 | 2.98 × 10–4 | 8.95 × 10–3 | 1.29 × 10–4 | 4.25 × 10–7 |
|  | 4066(4010) | 4725(4669) | P2, P3 | MK815101.1_Echovirus_E-30_NO/538705/FAE/2016 | JQ979292.1_Human_echovirus_1_polyprotein | 1.24 × 10–7 | 8.9 × 10–3 | 4.58 × 10–9 | 1.11 × 10–7 | 1.09 × 10–3 | 5.25 × 10–13 | NA |
|  | 4810(4754) | 6621(6565) | P3 | KY645964.1_Echovirus_E-30_16-I10 | KY674976.1_Coxsackievirus_A9_16C8 | 7.42 × 10–12 | 5.25 × 10–9 | 1.37 × 10–16 | 5.54 × 10–10 | 3.47 × 10–9 | 8.19 × 10–31 | 7.13 × 10–4 |
TL7C-NM-CHN-2016-E-30-genome | 3062(3006) | 6629(6573) | P2, P3 | KY888272.1_Echovirus_E-30_13-311 | MN337405.1_Echovirus_E18_LJ/0601/2019 | 5.28 × 10–119 | 1.8 × 10–112 | 9.78 × 10–100 | 7.57 × 10–27 | 2.3 × 10–9 | 4.04 × 10–87 | 6.49 × 10–13 |
|  | 4093(4037) | 4725(4669) | P2, P3 | MK815101.1_Echovirus_E-30_NO/538705/FAE/2016 | JQ979292.1_Human_echovirus_1_polyprotein | 1.24 × 10–7 | 8.9 × 10–3 | 4.58 × 10–9 | 1.11 × 10–7 | 1.09 × 10–3 | 5.25 × 10–13 | NA |
|  | 4810(4754) | 6621(6565) | P3 | KY645964.1_Echovirus_E-30_16-I10 | KY674976.1_Coxsackievirus_A9_16C8 | 7.42 × 10–12 | 5.25 × 10–9 | 1.37 × 10–16 | 5.54 × 10–10 | 3.47 × 10–9 | 8.19 × 10–31 | 7.13 × 10–4 |