Table 1 HPV 52 E6/E7/LCR nucleotide mutation sites (variable sites only)
Variant ID | E6 | E7 | LCR | N | Lineage | |||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | 7 | Â | Â | Â | Â | Â | Â | |||
1 | 3 | 3 | 3 | 3 | 5 | 5 | 6 | 7 | 7 | 7 | 7 | 7 | 7 | 8 | 8 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | |||
| Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | 1 | 2 | 3 | 3 | 3 | 4 | 4 | 4 | 5 | 5 | 5 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 7 | 7 | 7 | 7 | 8 | 8 | 8 | 9 | 9 | 9 | 1 | 1 | 2 | 6 | 7 | 8 | |||
0 | 5 | 5 | 7 | 7 | 3 | 7 | 6 | 0 | 0 | 2 | 3 | 4 | 5 | 0 | 4 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | |||
| Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | 6 | 0 | 7 | 7 | 9 | 1 | 2 | 9 | 0 | 8 | 8 | 2 | 2 | 5 | 5 | 7 | 9 | 9 | 1 | 1 | 4 | 8 | 6 | 6 | 8 | 1 | 3 | 3 | 3 | 5 | 1 | 1 | 6 | 3 | |||
8 | 0 | 6 | 8 | 9 | 0 | 3 | 2 | 6 | 7 | 7 | 3 | 2 | 1 | 1 | 8 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | |||
| Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | 8 | 7 | 1 | 7 | 3 | 4 | 1 | 5 | 9 | 0 | 6 | 2 | 4 | 7 | 9 | 1 | 3 | 6 | 2 | 3 | 3 | 8 | 1 | 5 | 9 | 7 | 3 | 8 | Â | Â | Â | Â | Â | Â | |||
X74481.1 | G | G | G | A | A | A | T | C | A | G | T | C | G | C | A | T | G | C | G | T | T | T | G | T | C | A | G | G | T | A | T | C | G | T | G | G | C | A | G | A | C | C | T | A | T | A | G | C | G | G | Â | A1 |
1 | – | T | – | – | G | – | – | – | – | – | – | – | – | T | G | – | C | A | T | – | – | – | – | – | – | – | – | A | G | C | C | – | – | – | C | – | – | – | A | G | – | – | C | G | C | – | – | – | – |  | 12 | B2 |
2 | – | T | – | – | G | – | – | – | – | – | – | – | – | T | G | – | C | A | T | – | – | – | – | – | – | – | – | A | G | C | C | – | – | – | C | – | – | – | A | G | – | – | – | G | C | – | – | – | – | – | 11 | B2 |
3 | – | T | A | – | G | – | – | – | – | – | – | – | – | T | G | – | C | A | T | – | – | – | – | – | – | – | – | A | G | C | C | – | – | – | C | – | – | – | A | G | – | – | – | – | C | – | – | – | – | – | 5 | B2 |
4 | – | T | – | C | G | – | – | – | – | – | – | – | – | T | G | – | C | A | T | – | – | – | – | – | – | – | – | A | G | C | C | – | – | – | C | – | – | – | A | G | – | – | – | – | C | – | – | – | – | – | 3 | B2 |
5 | – | T | – | – | G | – | – | – | – | – | – | – | – | T | G | – | C | A | T | – | – | – | – | – | – | – | – | A | G | C | C | – | – | – | C | – | – | – | A | G | – | – | – | – | C | – | – | – | – | – | 3 | B2 |
6 | C | T | – | – | G | – | – | – | – | – | – | – | – | T | G | – | C | A | T | – | – | – | – | – | – | – | – | A | G | C | C | – | – | – | C | – | – | – | A | G | – | – | C | G | C | C | – | – | – | – |  | B2 |
7 | – | T | A | – | G | – | – | – | – | – | – | – | – | T | G | – | C | A | T | – | – | – | – | – | – | – | – | A | G | C | C | – | – | – | C | – | – | – | A | G |  | – | C | – | C | – | – | – | – | – |  | B2 |
8 | – | T | A | – | G | – | – | – | – | – | – | – | – | T | G | – | C | A | T | C | – | – | – | – | – | – | – | A | G | C | C | – | – | – | C | – | – | – | A | G | – | – | – | – | C | – | – | T | – | – |  | B2 |
9 | – | T | – | – | G | – | – | – | – | – | – | – | – | T | G | – | C | A | T | – | – | – | – | – | – | – | – | A | G | C | C | – | – | – | C | – | – | – | A | G | – | – | C | – | C | – | – | – | – | – |  | B2 |
10 | – | T | – | – | G | – | – | – | – | – | – | – | – | T | G | – | C | A | T | – | – | – | – | G | – | – | – | A | G | C | C | – | – | – | C | – | – | – | A | G | – | – | – | – | C | – | – | – | – | – |  | B2 |
11 | – | T | – | – | G | – | – | – | – | – | – | – | – | T | G | – | C | A | T | – | – | – | – | – | – | – | – | A | G | C | C | – | – | – | C | – | – | – | A | G | T | – | – | G | C | – | T | – | C | T |  | B2 |
12 | – | T | – | – | – | G | A | T | G | A | G | T | A | – | G | G | – | – | – | – | C | C | A | – | G | C | A | A | G | – | C | T | A | C | C | A | T | G | A | – | – | A | – | – | – | – | – | – | – | – |  | C2 |
| Â | T7 | Â | Â | Â | K | Â | Â | T | S | S | Y | H | D | Â | Â | L | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
AA | E | Â | Â | Â | 9 | Â | Â | 3 | 5 | 5 | 5 | 6 | 6 | Â | Â | 9 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
changes | 3 | Â | Â | Â | 3 | Â | Â | 7 | 2 | 2 | 9 | 1 | 4 | Â | Â | 9 | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
| Â | Q | Â | Â | Â | R | Â | Â | I | D | D | D | Y | N | Â | Â | R | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |