Table 1 Gene and pathogen accessions used as reference sequences for read mapping
Accession | Name | Length | |||
|---|---|---|---|---|---|
Arabidopsis thaliana Gene locus identifier | Citrus sinensis accession | Gene symbol | Arabidopsis thaliana gene name | Citrus sinensis gene name | Â |
At2g28390 | XM_006488024.3 | SAND | SAND family protein | Vacuolar fusion protein MON1 homolog (LOC102625488) | 2415 |
At5g08290 | XM_006484464.3 | DIM1 | DIM1 homolog/YLS8 | Thioredoxin-like protein YLS8 (LOC102629695) | 727 |
At2g32170 | XM_006481276.3 | N/A | Unknown protein | Carnosine N-methyltransferase-like (LOC102617870) | 1773 |
At5g15710 | XM_006482390.2 | FBOX | F-box family protein | F-box/kelch-repeat protein At5g15710 (LOC102621205) | 4479 |
At3g53090 | XM_025099888.1 | UPL7 | Ubiquitin-protein ligase 7 | E3 ubiquitin-protein ligase UPL7 (LOC102621690) | 3888 |
At5g25760 | XM_006476013.2 | UBC21 | Ubiquitin-conjugating enzyme 21 | Protein PEROXIN-4 (LOC102618324) | 1029 |
At3g01150 | XM_025099846.1 | PTB1 | Polypyrimidine tract-binding protein 1 | Polypyrimidine tract-binding protein homolog 1 (LOC102618721) | 1708 |
At1g13440 | XM_006476919.3 | GAPC2 | Glyceraldehyde-3-phosphate dehydrogenase C2 | Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic (LOC102624117) | 1464 |
At4g27960 | XM_006490521.3 | UBC9 | Ubiquitin conjugating enzyme 9 | Ubiquitin-conjugating enzyme E2 10 (LOC102614401) | 961 |
At3g18780 | XM_006464503.3 | ACT2 | Actin-2 | Actin-7 (LOC102577980) | 1786 |
At5g60390 | XM_006485840.3 | EF-1a | Elongation factor 1-alpha | Elongation factor 1-alpha (LOC102613486) | 1870 |
At1G20010 | XM_006473602.3 | TUB | Beta-Tubulin | Tubulin beta-6 chain (LOC102631140) | 1756 |
Genbank accession | Â | Pathogen abbreviation | Pathogen name | Â | Â |
KU883265 | Â | CTV | Citrus tristeza virus B390-5 RB | Â | 19,270 |
MK033511 | Â | CTV | Citrus tristeza virus GFMS12-8 T68 | Â | 19,246 |
MH108976.1 | Â | CTLV | Citrus tatter leaf virus isolate TL101 | Â | 6494 |
MT720885 | Â | CiVA | Citrus virus A RNA1 isolate 1.8 | Â | 6690 |
MT720886 | Â | CiVA | Citrus virus A RNA2 isolate 1.8 | Â | 2731 |
KY110716.1 | Â | HSVd | Hop stunt viroid strain R140902-7 | Â | 302 |
KY110717.1 | Â | HSVd | Hop stunt viroid strain R120621-2 (Cachexia) | Â | 295 |
KY110718.1 | Â | CDVd | Citrus dwarfing viroid strain R140910-12 | Â | 297 |
KY110721.1 | Â | CEVd | Citrus exocortis viroid strain R140902-18 | Â | 372 |