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Table 1 Primer sequences used for serotyping and viral load quantification. All primers are new for this work. Primers for each serotype share annealing temperatures, which enables interchangeable use within each set

From: Whole genome sequencing and genetic variations in several dengue virus type 1 strains from unusual dengue epidemic of 2017 in Vietnam

Primer name

Sequence

DENV1-F

5′ – ATCCATGCCCAYCACCAAT – 3’

DENV1-R

5′ – TGTGGGTTTTGTCCTCCATC – 3’

DENV1-Probe

5′ – FAM – TCAGTGTGGAATAGGGTTTGGATAGAGGAA – 3′ – BHQ

DENV2-F

5′ – TCCATACACGCCAAACATGAA – 3′

DENV2-R

5′ – GGGATTTCCTCCCATGATTCC – 3′

DENV2-Probe

5′ – FAM – AGGGTGTGGATTCGAGAAAACCCATGG – 3′ – BHQ

DENV3-F

5′ – TTTCTGCTCCCACCACTTTC – 3’

DENV3-R

5′ – CCATCCYGCTCCTTGAGA – 3’

DENV3-Probe

5′ – CYAN500 – AAGAAAGTTGGTAGTTCCCTGCAGACCCA – 3′ – BHQ

DENV4-F

5′ – GYGTGGTGAAGCCTCTRGAT – 3’

DENV4-R

5′ – AGTGARCGGCCATCCTTCAT – 3’

DENV4-

5′ – CYAN500 –

Probe

ACTTCCCTCCTCTTYTTGAACGACATGGGA – 3′ – BHQ