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Table 5 Estimates of selection pressure on the coding regions of twelve Tomato leaf curl virus Arusha virus -like isolates from Kenya

From: Metagenomic analyses and genetic diversity of Tomato leaf curl Arusha virus affecting tomato plants in Kenya

Coding regiona Total number of sites log L dN dS dN/dS Number of sitesb
Positive or diversifying selection Negative or purifying selection
V1 114  − 651.20 0.0363 0.1757 0.2067 0 1
V2 258  − 1483.95 0.0150 0.2212 0.0677 0 3
C1 364  − 2392.81 0.0847 0.2124 0.3986 0 11
C2 135  − 856.05 0.0607 0.2085 0.2908 0 1
C3 134  − 708.30 0.0307 0.1184 0.2590 0 2
C4 85  − 509.31 0.0392 0.0341 1.1491 0 0
  1. aV1: Movement protein gene, V2: Coat protein gene, C1: Replication-associated protein gene, C2: Transcriptional activator protein gene, C3: Replication enhancer protein gene, C4: C4 protein gene
  2. bSelected at P ≤ 0.1
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Virology Journal

ISSN: 1743-422X