Population
|
Genea
|
Nb
|
hc
|
Sd
|
Hde
|
Etaf
|
πg
|
kh
|
θ-Wi
|
θ-Etaj
|
Tajima's D
|
Fu and Li's D
|
Fu and Li's F
|
---|
Tomato begomoviruses
|
Genome
|
2920
|
46
|
1666
|
1.000
|
2985
|
0.22424
|
569.5749
|
0.14924
|
0.2674
|
− 0.5971
|
− 0.2912
|
− 0.4859
|
(n = 46)
|
V1
|
372
|
43
|
241
|
0.996
|
419
|
0.22538
|
76.1768
|
0.16224
|
0.28206
|
− 0.7389
|
− 0.8229
|
− 0.9463
|
|
V2
|
1261
|
46
|
752
|
1.000
|
1334
|
0.22421
|
271.971
|
0.14106
|
0.25023
|
− 0.3842
|
− 0.0052
|
− 0.1764
|
|
C1
|
1179
|
46
|
692
|
1.000
|
1213
|
0.21165
|
225.4106
|
0.14784
|
0.25915
|
− 0.6771
|
− 0.3609
|
− 0.5737
|
|
C2
|
431
|
45
|
264
|
0.999
|
458
|
0.23777
|
97.486
|
0.14651
|
0.25417
|
− 0.2374
|
− 0.0923
|
− 0.1752
|
|
C3
|
469
|
45
|
303
|
0.999
|
550
|
0.24589
|
108.1903
|
0.15669
|
0.28442
|
− 0.4989
|
− 0.3631
|
− 0.4949
|
|
C4
|
316
|
44
|
210
|
0.997
|
360
|
0.21015
|
65.1459
|
0.15414
|
0.26423
|
− 0.7516
|
− 0.4512
|
− 0.6736
|
Kenyan ToLCArV-like
|
Genome
|
2766
|
12
|
211
|
1.000
|
224
|
0.0264
|
72.955
|
0.0253
|
0.0268
|
− 0.0774
|
− 0.4189
|
− 0.3751
|
isolates (n = 12)
|
V1
|
360
|
9
|
22
|
0.939
|
24
|
0.02298
|
8.2727
|
0.02024
|
0.02208
|
0.1819
|
0.1216
|
0.1564
|
|
V2
|
1239
|
12
|
71
|
1.000
|
72
|
0.0209
|
25.8788
|
0.01899
|
0.01926
|
0.3958
|
− 0.0631
|
0.0659
|
|
C1
|
1116
|
12
|
94
|
1.000
|
102
|
0.02744
|
30.6212
|
0.02789
|
0.03027
|
− 0.4355
|
− 0.7775
|
− 0.7841
|
|
C2
|
422
|
11
|
39
|
0.985
|
40
|
0.02761
|
11.6515
|
0.0306
|
0.03139
|
− 0.5481
|
− 1.072
|
− 1.065
|
|
C3
|
450
|
11
|
23
|
0.985
|
23
|
0.01872
|
8.4242
|
0.01692
|
0.01692
|
0.4703
|
− 0.3193
|
− 0.1286
|
|
C4
|
312
|
10
|
11
|
0.955
|
11
|
0.00869
|
2.7121
|
0.01167
|
0.01167
|
− 1.0628
|
− 1.4718
|
− 1.552
|
- aV1: Movement protein gene, V2: Coat protein gene, C1: Replication-associated protein gene, C2: Transcriptional activator protein gene, C3: Replication enhancer protein gene, C4: C4 protein gene
- bN: Number of nucleotide sites
- ch: Haplotype number
- dS: Total number of variable or segregation sites
- eHd: Haplotype diversity
- fEta: Total number of mutations
- gπ: Nucleotide diversity
- hk: Average number of nucleotide differences between sequences
- iθ-W: Waterson’s estimate of population mutation rate based on the total number of segregating sites
- jθ-Eta: Waterson’s estimate of population mutation rate based on the total number of mutations