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Table 3 Identification of Kenyan Tomato leaf curl virus Arusha virus-like isolates as parents of putative recombinant tomato begomoviruses using the RDP4 software

From: Metagenomic analyses and genetic diversity of Tomato leaf curl Arusha virus affecting tomato plants in Kenya

Recombinantsa Potential parentsb Recombination breakpoints Average p values in detecting algorithmsc
Minor Major R G B M C S T
ToLCArV ToLCUV ToLCArV 158–524 2.42E−06 2.04E−04 7.13E−09 4.67E−10 1.68E−12
TZTen05-Tanzania (DQ519575) Iganga-Uganda (DQ127170) Tom5a-Kenya (MN894493)
ToLCDiV ToLCArV ToLCMohV 1091–1583 1.48E−12 4.75E−12 1.32 E−10 1.04E−10 1.17E−05 4.29E−04
Namakely-Madagascar (AM701765) Tom39-Kenya (MN894499) Moheli-Comoros (AM701763)
  1. aToLCArV: Tomato leaf curl virus Arusha virus, ToLCDiV: Tomato leaf curl Diana virus
  2. bToLCUV: ToLCUV: Tomato leaf curl Uganda virus, ToLCMohV: Tomato leaf curl Moheli virus
  3. cR: RDP, G: GENECONV, B: BootScan, M: MaxChi, C: Chimaera, S: SiScan, T: 3Seq