Genomic and phylogenetic characterization of ChPV2, a novel goat PV closely related to the Xi-PV1 species infecting bovines

Table 1 L1 gene nucleotide (nt) similarity matrix of ChPV2 and closely related PV types, yet unclassified PV types are marked with a question sign

% L1 nt similarity	ChPV2?	BPV3 XiPV	BPV4 XiPV	BPV6 XiPV	BPV9 XiPV	BPV10 XiPV	BPV11 XiPV	BPV12 XiPV	BPV15 XiPV	BPV17 XiPV	BPV20 XiPV	BPV23 XiPV	BPV24 XiPV	CePV2 XiPV	ChPV1 PhiPV	RtPV2 XiPV	RtiPV1?
ChPV2 ?		69.7	70.1	72.0	70.2	71.3	70.3	66.5	67.5	58.3	64.7	69.2	69.6	63.8	55.3	67.5	59.9
BPV3 XiPV	69.7		72.5	72.0	73.0	70.1	72.0	67.1	72.2	60.2	64.8	78.3	70.3	65.4	56.6	65.3	59.2
BPV4 XiPV	70.1	72.5		71.5	73.3	69.7	77.6	66.2	72.1	60.2	65.4	72.8	77.4	64.2	56.2	66.3	60.9
BPV6 XiPV	72.0	72.0	71.5		71.4	69.2	71.2	67.0	70.0	60.8	66.5	74.1	71.2	64.4	57.6	66.9	60.4
BPV9 XiPV	70.2	73.0	73.3	71.4		70.9	74.3	65.8	74.5	59.7	66.6	73.3	72.6	63.5	57.2	66.7	59.6
BPV10 XiPV	71.3	70.1	69.7	69.2	70.9		69.9	65.6	69.6	58.3	66.5	72.5	69.2	63.9	56.8	67.1	59.9
BPV11 XiPV	70.3	72.0	77.6	71.2	74.3	69.9		65.3	73.6	60.4	65.2	73.7	75.7	64.0	57.0	65.9	60.9
BPV12 XiPV	66.5	67.1	66.2	67.0	65.8	65.6	65.3		66.6	61.0	67.1	67.0	67.1	65.0	56.2	69.0	60.1
BPV15 XiPV	67.5	72.2	72.1	70.0	74.5	69.6	73.6	66.6		60.8	66.2	72.2	73.8	64.0	56.5	65.3	59.8
BPV17 XiPV	58.3	60.2	60.2	60.8	59.7	58.3	60.4	61.0	60.8		60.4	59.2	60.4	58.6	53.7	60.2	58.1
BPV20 XiPV	64.7	64.8	65.4	66.5	66.6	66.5	65.2	67.1	66.2	60.4		64.4	65.2	63.7	56.8	73.4	59.9
BPV23 XiPV	69.2	78.3	72.8	74.1	73.3	72.5	73.7	67.0	72.2	59.2	64.4		72.1	65.3	56.7	65.5	59.7
BPV24 XiPV	69.6	70.3	77.4	71.2	72.6	69.2	75.7	67.1	73.8	60.4	65.2	72.1		62.2	57.2	65.9	59.8
CePV2 XiPV	63.8	65.4	64.2	64.4	63.5	63.9	64.0	65.0	64.0	58.6	63.7	65.3	62.2		55.5	64.8	58.5
ChPV1 PhiPV	55.3	56.6	56.2	57.6	57.2	56.8	57.0	56.2	56.5	53.7	56.8	56.7	57.2	55.5		57.1	60.3
RtPV2 XiPV	67.5	65.3	66.3	66.9	66.7	67.1	65.9	69.0	65.3	60.2	73.4	65.5	65.9	64.8	57.1		60.0
RtiPV1?	59.9	59.2	60.9	60.4	59.6	59.9	60.9	60.1	59.8	58.1	59.9	59.7	59.8	58.5	60.3	60.0

ISSN: 1743-422X