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Table 1 Summary statistics of prophages predicted in the NTM draft genomes assemblies. Median counts of tRNA, N50 Lengths, and counts of contigs in NTM draft genomes are shown with the ranges in parenthesis. The edge case average is the total number of edge cases divided by the draft genome count

From: Characterization of integrated prophages within diverse species of clinical nontuberculous mycobacteria

Species

Genomes Count

Genomes with Phage

Predicted Prophages

Median tRNA Count

Median N50 Length

Median

Contig

Count

Edge Cases Average

M. avium

43

1

1

57 (54–108)

81,670 (56262–116,826)

206 (126–336)

1.07

M. chimera

11

1

1

55 (49–81)

86,644 (78123–101,816)

193 (116–251)

1.00

M. intracellulare

23

3

4

52 (50–54)

101,938 (82877–131,830)

104 (83–145)

0.13

M. abscessus

76

42

51

48 (45–116)

168,941 (87141–327,102)

67 (41–191)

2.60

M. bolletti

4

3

3

48.5 (48–49)

208,710 (140476–226,296)

45 (37–59)

2.50

M. massiliense

25

11

12

51 (46–84)

215,865 (97542–413,240)

53 (39–143)

2.84