Fig. 2
From: Whole genomic analysis of a potential recombinant human adenovirus type 1 in Qinghai plateau, China
Genomic recombinant analyses of the complete genome of QH-1665/2018. a Genetic organization of QH-1665/2018. b Recombination events predicted in strain QH-1665/2018. QH-1665/2018 genome is shown with blue. The likely backbone is shown with yellow. Recombination event predicted by RDP4 are shown as red and green, respectively. Likely breakpoint positions are shown above the genome. c BootScan analysis of QH-1665/2018. QH-1665/2018 was used as the query sequence and compared with 3 representative strains of HAdV-C, including HAdV-1 (AC_000017.1), HAdV-2 (AC_000007.1) and HAdV-5 (AC_000008.1). The default setting of SimPlot software was used as follows: window size 200 bp, step size 20 bp. 100 replicates used, gap stripping, distance model (Kimura) and tree model (neighbor-joining)