Table 2 Main features of Illumina MiSeq sequencing Run obtained from Geno2pheno (ngs-freq)
Total paired read | Combined | Uncombined | % Combined | Number of reads | |
|---|---|---|---|---|---|
1 (BL) | 2,735,084 | 2,187,422 | 547,662 | 79.98% | NS3 28,256 |
NS5A 980,338 | |||||
NS5B 627,791 | |||||
1 (FA) | 419,627 | 122,250 | 297,377 | 29.13% | NS3 4259 |
NS5A 44,002 | |||||
NS5B 43,337 | |||||
2 (BL) | 2,211,307 | 1,677,988 | 533,319 | 75.88% | NS3 783,853 |
NS5A 474,463 | |||||
NS5B 40,397 | |||||
2 (FA) | 1,978,054 | 1,429,660 | 548,398 | 72.28% | NS3 191,206 |
NS5A 495,980 | |||||
NS5B 386,943 | |||||
3 (BL) | 1,978,438 | 1,288,921 | 689,517 | 65.15% | NS3 71,599 |
NS5A 151,920 | |||||
NS5B 536,113 | |||||
3 (FA) | 1,955,249 | 1,169,929 | 785,320 | 59.84% | NS3 22,792 |
NS5A 70,599 | |||||
NS5B 854,945 | |||||
4 (BL) | 1,872,852 | 1,429,177 | 443,675 | 76.31% | NS3 31,485 |
NS5A 401,883 | |||||
NS5B 643,826 | |||||
4 (FA) | 1,915,206 | 1,382,401 | 532,805 | 72.18% | NS3 8880 |
NS5A 456,266 | |||||
NS5B 650,246 |