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Table 2 Main features of Illumina MiSeq sequencing Run obtained from Geno2pheno (ngs-freq)

From: Detection of low-level HCV variants in DAA treated patients: comparison amongst three different NGS data analysis protocols

  Total paired read Combined Uncombined % Combined Number of reads
1 (BL) 2,735,084 2,187,422 547,662 79.98% NS3 28,256
NS5A 980,338
NS5B 627,791
1 (FA) 419,627 122,250 297,377 29.13% NS3 4259
NS5A 44,002
NS5B 43,337
2 (BL) 2,211,307 1,677,988 533,319 75.88% NS3 783,853
NS5A 474,463
NS5B 40,397
2 (FA) 1,978,054 1,429,660 548,398 72.28% NS3 191,206
NS5A 495,980
NS5B 386,943
3 (BL) 1,978,438 1,288,921 689,517 65.15% NS3 71,599
NS5A 151,920
NS5B 536,113
3 (FA) 1,955,249 1,169,929 785,320 59.84% NS3 22,792
NS5A 70,599
NS5B 854,945
4 (BL) 1,872,852 1,429,177 443,675 76.31% NS3 31,485
NS5A 401,883
NS5B 643,826
4 (FA) 1,915,206 1,382,401 532,805 72.18% NS3 8880
NS5A 456,266
NS5B 650,246
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